Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N17
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical ... 31 0.50
AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical ... 31 0.50
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical p... 28 4.7
Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical pr... 28 4.7
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 28 4.7
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 28 4.7
U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical pr... 27 6.2
U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical pr... 27 6.2
U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical pr... 27 6.2
>AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.7 protein.
Length = 239
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 20 IRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--KQVQ 193
+ KV + + K ++ A CF+++H D AAS ++ ++ K K++
Sbjct: 42 LEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELH 101
Query: 194 ENFKPDNVKKQ 226
+NFK + K+Q
Sbjct: 102 DNFKSSDTKQQ 112
>AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.3 protein.
Length = 239
Score = 31.1 bits (67), Expect = 0.50
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 20 IRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--KQVQ 193
+ KV + + K ++ A CF+++H D AAS ++ ++ K K++
Sbjct: 42 LEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLKELH 101
Query: 194 ENFKPDNVKKQ 226
+NFK + K+Q
Sbjct: 102 DNFKSSDTKQQ 112
>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
C38D4.3 protein.
Length = 1784
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 110 KRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNS 283
K D E S N E+E E+K Q QEN + +K F N DDF + P +
Sbjct: 1127 KHDEEKDSEKNVVDEME----EVKDQEQENDECIESEKTFENQ-DDFEVLEDTSAPEA 1179
>Z37139-11|CAO82010.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 125 AASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 289
AA+ N F++ ++ + + +++F+ K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>Z34799-9|CAO82035.1| 487|Caenorhabditis elegans Hypothetical
protein F34D10.9 protein.
Length = 487
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +2
Query: 125 AASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 289
AA+ N F++ ++ + + +++F+ K + N ++DFNKF++S + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 282 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSI 154
++ +L+++++ S L+ C LT S + F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 282 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSI 154
++ +L+++++ S L+ C LT S + F+C F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406
>U28738-7|AAA68312.1| 341|Caenorhabditis elegans Hypothetical
protein T28D9.3a protein.
Length = 341
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 336 NSYIGIIIISVFFYFGASELGFMLLINL 253
N+++ ++ + + YFG S++GF++ I L
Sbjct: 112 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 139
>U28738-6|AAT92056.1| 274|Caenorhabditis elegans Hypothetical
protein T28D9.3c protein.
Length = 274
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 336 NSYIGIIIISVFFYFGASELGFMLLINL 253
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
>U28738-5|AAT92055.1| 342|Caenorhabditis elegans Hypothetical
protein T28D9.3b protein.
Length = 342
Score = 27.5 bits (58), Expect = 6.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 336 NSYIGIIIISVFFYFGASELGFMLLINL 253
N+++ ++ + + YFG S++GF++ I L
Sbjct: 113 NNHLHVLFVRLLTYFGYSQIGFVMNIAL 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,347,193
Number of Sequences: 27780
Number of extensions: 122630
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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