Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N16
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    28   0.89 
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   2.7  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   8.3  

>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 2   HEGYIP*K-FCSQNRFE*IATMNVLGSLFGSAA 97
           H+ Y+  K F  QNR   +AT+N+L  + GS A
Sbjct: 201 HKTYLTDKNFVGQNRSTFLATLNILAQILGSMA 233


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 145 VLKRTSVFQKLHGRFLRCAAKQAPEY 68
           V+ + ++ +   G FL CA + APEY
Sbjct: 210 VVHKATIMRMADGLFLECAKELAPEY 235


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 160  DGKTLVLKRTSVFQKLHGRFLRCAAKQAPEYVH 62
            D +TL +KRT VF+      + C  K+  EY+H
Sbjct: 1401 DLRTL-MKRTKVFEGDGRAIIFCRTKKDVEYIH 1432


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 160  DGKTLVLKRTSVFQKLHGRFLRCAAKQAPEYVH 62
            D +TL +KRT VF+      + C  K+  EY+H
Sbjct: 1401 DLRTL-MKRTKVFEGDGRAIIFCRTKKDVEYIH 1432


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 91   AAKQAPEYVHGCYLLEPVL 35
            AA  A  Y  GCY+L+PVL
Sbjct: 1304 AAINASLYPPGCYMLKPVL 1322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,203
Number of Sequences: 5004
Number of extensions: 34704
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)