Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N16
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124...    33   0.17 
08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793     29   2.1  
03_01_0171 + 1399378-1400349                                           29   2.1  

>09_01_0087 +
           1245890-1246565,1247409-1247484,1247774-1247893,
           1248927-1249002,1250767-1250835,1251019-1251099,
           1251298-1251369,1251600-1251692,1251904-1252083,
           1252558-1252641,1252729-1252872,1253089-1253178,
           1255982-1256064,1256140-1256421,1256722-1256959,
           1258307-1258957
          Length = 1004

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 148 LVLKRTSVFQKLHGRFLRCAAKQAPEYVHGC-YLLEPVLAAK-LLWNVAL 5
           ++LKR + F K   R L+ A ++ P+Y  GC ++L  VL AK  LW + L
Sbjct: 573 VMLKRVAAFAK---RLLQVALQRPPQYACGCLFILSEVLKAKPPLWAIVL 619


>08_02_0511 + 18002930-18003104,18003137-18003180,18003194-18003793
          Length = 272

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 125 FSETTWAILALRCQTSSRVRSWLLSTRTCFG 33
           +SE  W    L+C  S R   WLL+ R  FG
Sbjct: 160 YSEMKWMSNTLQCSISKRQFRWLLNIRLDFG 190


>03_01_0171 + 1399378-1400349
          Length = 323

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = +1

Query: 94  SARIAHVVSEKLMSASRPMFY 156
           +AR+AH++SE  +SAS P+F+
Sbjct: 171 AARVAHLLSEPRLSASSPLFH 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,243
Number of Sequences: 37544
Number of extensions: 197403
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)