Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N16
         (590 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061556-1|AAL29104.1|  581|Drosophila melanogaster LP09339p pro...    58   7e-09
AE014296-1802|AAF50167.2|  581|Drosophila melanogaster CG6611-PB...    58   7e-09
AE014296-1801|AAF50168.2|  581|Drosophila melanogaster CG6611-PA...    58   7e-09

>AY061556-1|AAL29104.1|  581|Drosophila melanogaster LP09339p
           protein.
          Length = 581

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
 Frame = +1

Query: 10  LHSIKVLQPKQVRVDS--NHERTRELVWQRSARIAHVVSEKLMSASRPMF 153
           L SIKV QPKQV V+S  NH+RTRE VW+R+ +IA +V+EKL  A+  +F
Sbjct: 522 LMSIKVQQPKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLF 571


>AE014296-1802|AAF50167.2|  581|Drosophila melanogaster CG6611-PB,
           isoform B protein.
          Length = 581

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
 Frame = +1

Query: 10  LHSIKVLQPKQVRVDS--NHERTRELVWQRSARIAHVVSEKLMSASRPMF 153
           L SIKV QPKQV V+S  NH+RTRE VW+R+ +IA +V+EKL  A+  +F
Sbjct: 522 LMSIKVQQPKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLF 571


>AE014296-1801|AAF50168.2|  581|Drosophila melanogaster CG6611-PA,
           isoform A protein.
          Length = 581

 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
 Frame = +1

Query: 10  LHSIKVLQPKQVRVDS--NHERTRELVWQRSARIAHVVSEKLMSASRPMF 153
           L SIKV QPKQV V+S  NH+RTRE VW+R+ +IA +V+EKL  A+  +F
Sbjct: 522 LMSIKVQQPKQVEVESKDNHDRTREFVWRRTPKIAKLVNEKLKLAAESLF 571


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,090,341
Number of Sequences: 53049
Number of extensions: 348605
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)