Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N15
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 124 9e-30
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 121 9e-29
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 118 5e-28
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 27 2.6
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 4.5
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 25 6.0
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 124 bits (299), Expect = 9e-30
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +1
Query: 322 PAEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 501
P E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G
Sbjct: 86 PDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYG 145
Query: 502 YPNLKSVRELVYKRGFAKLNGKRV 573
PNLK+VREL+YKRGF K+N +R+
Sbjct: 146 IPNLKTVRELLYKRGFGKVNKQRI 169
Score = 54.0 bits (124), Expect = 1e-08
Identities = 31/78 (39%), Positives = 41/78 (52%)
Frame = +3
Query: 90 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 269
SK+ PES+ ++++A KKR+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 270 EIRFGPRQARNRGNYYVP 323
+I G R+AR GNYYVP
Sbjct: 70 QIELG-RKARAEGNYYVP 86
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 121 bits (291), Expect = 9e-29
Identities = 56/87 (64%), Positives = 66/87 (75%)
Frame = +1
Query: 313 IMCPAEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 492
I P E KL FVIRI GV + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+
Sbjct: 81 IFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYV 140
Query: 493 AWGYPNLKSVRELVYKRGFAKLNGKRV 573
+G PNL SVREL+YKRGF K+NG+R+
Sbjct: 141 MYGIPNLHSVRELIYKRGFGKINGQRI 167
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +3
Query: 177 LKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRFGPRQARNRGNYYVP 323
+ ++ A K RKE FKRAE ++ YR +ER+ IR R A+N+G+ +VP
Sbjct: 37 IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLN-RSAKNKGDIFVP 84
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 118 bits (285), Expect = 5e-28
Identities = 50/84 (59%), Positives = 66/84 (78%)
Frame = +1
Query: 322 PAEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 501
P E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G
Sbjct: 85 PHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYG 144
Query: 502 YPNLKSVRELVYKRGFAKLNGKRV 573
PN K+VREL+YKRGF K+N +R+
Sbjct: 145 IPNHKTVRELIYKRGFGKVNKQRI 168
Score = 50.8 bits (116), Expect = 1e-07
Identities = 28/71 (39%), Positives = 37/71 (52%)
Frame = +3
Query: 111 PESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRFGPR 290
PES+ +++SA KKR+ I KRAE Y EYR ER++I R
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELA-R 74
Query: 291 QARNRGNYYVP 323
+AR GNY+VP
Sbjct: 75 KARAEGNYFVP 85
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 314 IIATVTSLSWAKSDFITLLDAVFFDILFGSLKDFFPLL 201
I ++VT L W I+L + F LF SLK+F L+
Sbjct: 105 IKSSVTLLDWILPRTISLFADIRFIKLFDSLKEFHKLI 142
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 4.5
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 398 NTLRTLGDTWLTPRIRMTNASLASAGHIIIATV--TSLSWAKSDFITLLDAVFFDILFGS 225
+TLR D W + +A + A V + +WA+ D + + FFDI+FG
Sbjct: 365 DTLRAQLDLWNEEHGEFYASGIAPIFSPLKARVYDSDWNWARQDALKM----FFDIIFGR 420
Query: 224 LK 219
LK
Sbjct: 421 LK 422
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 305 WQLLCARLKLN*HLSSVFVVSTKYHPRYARYCSCS 409
W L+ L ++ HLSSV + ++ + Y SC+
Sbjct: 73 WSLVADSLPVSQHLSSVVIFASVFVSIYRNQLSCA 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,901
Number of Sequences: 5004
Number of extensions: 44319
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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