Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N15
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   132   3e-31
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   130   1e-30
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    78   4e-15
07_03_0748 - 21191457-21191509,21191845-21192099,21192198-211935...    28   4.6  
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546...    28   6.1  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  132 bits (318), Expect = 3e-31
 Identities = 58/82 (70%), Positives = 72/82 (87%)
 Frame = +1

Query: 328 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 507
           EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+GYP
Sbjct: 83  EAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 142

Query: 508 NLKSVRELVYKRGFAKLNGKRV 573
           NLKSVREL+YKRG+ KLN +R+
Sbjct: 143 NLKSVRELIYKRGYGKLNKQRI 164



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +3

Query: 96  KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEI 275
           K   VPESV               +  L  +  +++ RK IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 276 RFGPRQARNRGNYYV 320
           +   R+AR +G +YV
Sbjct: 67  QL-KREARMKGGFYV 80


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  130 bits (313), Expect = 1e-30
 Identities = 57/82 (69%), Positives = 71/82 (86%)
 Frame = +1

Query: 328 EAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYP 507
           E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NMLR  EPY+A+GYP
Sbjct: 82  EEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYP 141

Query: 508 NLKSVRELVYKRGFAKLNGKRV 573
           NLKSVREL+YKRG+ KLN +R+
Sbjct: 142 NLKSVRELIYKRGYGKLNKQRI 163



 Score = 47.2 bits (107), Expect = 9e-06
 Identities = 24/71 (33%), Positives = 38/71 (53%)
 Frame = +3

Query: 108 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERDEIRFGP 287
           VPESV               +  +  +  SI+ RK IF RA+QY +EY  +E++ ++   
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQL-K 68

Query: 288 RQARNRGNYYV 320
           R+AR +G +YV
Sbjct: 69  REARMKGGFYV 79


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 35/78 (44%), Positives = 54/78 (69%), Gaps = 3/78 (3%)
 Frame = +1

Query: 322 PAE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYI 492
           PAE   +KL F IRI G   + P +R++L+  RL Q+  GVF++   AT+  L + EP+I
Sbjct: 80  PAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFI 139

Query: 493 AWGYPNLKSVRELVYKRG 546
            +G+PNLK+V++L+YK+G
Sbjct: 140 TYGFPNLKNVKDLIYKKG 157


>07_03_0748 -
           21191457-21191509,21191845-21192099,21192198-21193502,
           21194160-21194232
          Length = 561

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 392 LRTLGDTWLTPRIRMTNASLASAGHIIIATVTSLSWAKSDFI 267
           LR+L +T +   + + N  LASAGH      ++L W K++ +
Sbjct: 68  LRSLSNTGIKVMVALPNKDLASAGH---DQGSALDWVKTNIV 106


>03_06_0340 +
           33252677-33252864,33253086-33254442,33254565-33254667,
           33256081-33256171,33257208-33257300,33258316-33258471,
           33258583-33258655
          Length = 686

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 244 KNTASRSVMKSDLAQDRLVTV 306
           KNTAS  V KSDL +++LV +
Sbjct: 419 KNTASIEVYKSDLVEEKLVKI 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,478,430
Number of Sequences: 37544
Number of extensions: 308369
Number of successful extensions: 803
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)