Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N15
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   134   4e-32
Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical p...    29   2.4  
AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z70034-12|CAA93859.1|  235|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z68318-9|CAA92698.1|  235|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  134 bits (324), Expect = 4e-32
 Identities = 58/84 (69%), Positives = 74/84 (88%)
 Frame = +1

Query: 322 PAEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 501
           PAE K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWG
Sbjct: 80  PAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWG 139

Query: 502 YPNLKSVRELVYKRGFAKLNGKRV 573
           YPN K++ +L+YKRG+AK++G RV
Sbjct: 140 YPNNKTIHDLLYKRGYAKVDGNRV 163



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 45/78 (57%)
 Frame = +3

Query: 90  SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEQYVKEYRIKERD 269
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 270 EIRFGPRQARNRGNYYVP 323
            +R   R+A  +G++YVP
Sbjct: 64  GLRL-KREAEAKGDFYVP 80


>Z81533-12|CAB04333.2|  356|Caenorhabditis elegans Hypothetical
           protein F36G9.1 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 314 IIATVTSLSWAKSDFITL-LDAVFFDILFGSLKDFFPLLNGS 192
           +IAT   L     DF++L     FF ILFG+  +F  L+NG+
Sbjct: 282 VIATFPLLLTYLVDFLSLGYRLAFFIILFGAFCEFVSLINGT 323


>AC006631-2|AAL02500.1|  142|Caenorhabditis elegans Hypothetical
           protein F27B3.7 protein.
          Length = 142

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
 Frame = +1

Query: 187 VPLPLRRGK-----KSLREPNNMSKNTASRSVMKSD 279
           +PL +RR       KS+ +P N+  NTA  ++M SD
Sbjct: 25  IPLEIRRKHNLTQLKSMIDPQNLDDNTALEAIMNSD 60


>Z70034-12|CAA93859.1|  235|Caenorhabditis elegans Hypothetical
           protein C18E9.10 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 365 TPRIRMTNASLASAGHIIIATVTSLSWAKSDFITLLDAVF 246
           +P+ R+   S  SA   + AT+ S  W KS   TL+ A+F
Sbjct: 157 SPQRRLVTVSYLSA---LFATLYSSLWLKSTIFTLIAAIF 193


>Z68318-9|CAA92698.1|  235|Caenorhabditis elegans Hypothetical
           protein C18E9.10 protein.
          Length = 235

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 365 TPRIRMTNASLASAGHIIIATVTSLSWAKSDFITLLDAVF 246
           +P+ R+   S  SA   + AT+ S  W KS   TL+ A+F
Sbjct: 157 SPQRRLVTVSYLSA---LFATLYSSLWLKSTIFTLIAAIF 193


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 169 RSHSRGVPLPLRRGKKSLREPNNMSKN 249
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKS 259


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 169 RSHSRGVPLPLRRGKKSLREPNNMSKN 249
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKS 281


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 169 RSHSRGVPLPLRRGKKSLREPNNMSKN 249
           R +++G+  PLR   KSLR+ N + K+
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKS 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,971,891
Number of Sequences: 27780
Number of extensions: 260304
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)