Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N14
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    25   0.65 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    25   0.65 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   6.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.9  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 40  LVYKCKIIKSGYTTFARLHIHNGNRH 117
           +V  C  I++G   FARL  HN NRH
Sbjct: 380 MVDSCSNIQTG-EQFARLLRHNFNRH 404


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 40  LVYKCKIIKSGYTTFARLHIHNGNRH 117
           +V  C  I++G   FARL  HN NRH
Sbjct: 387 MVDSCSNIQTG-EQFARLLRHNFNRH 411


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 46  YKCKIIKSGYTTFARLHIHNG 108
           +KCKI    +TT   L  H G
Sbjct: 163 FKCKICGRAFTTKGNLKTHMG 183


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/58 (22%), Positives = 27/58 (46%)
 Frame = -2

Query: 509 LSKGISTSIIFPKLLKKFFISSSEISLLRPPTKILPCLAFAFLGSTFLLLIVCSPAAI 336
           L+  +S  I+ PK+ +     +    ++  P  I   L ++ +    LLL V +P+ +
Sbjct: 254 LTDAVSFPIVLPKVQELARFGAYGPDMIYTPQDIRDLLQYSLVRGVRLLLEVDAPSHV 311


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 599 IVCLGVFSSSFTTCSDSN 546
           ++ LGV+  SFT  S SN
Sbjct: 261 VLGLGVYGRSFTLASASN 278


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 457 NFFSNFGNIIEVEMPFDK 510
           NF    GN I V++P+DK
Sbjct: 318 NFDKMIGNPICVQIPWDK 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,873
Number of Sequences: 336
Number of extensions: 3094
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)