Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N14
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 74 2e-14
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 48 1e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 2e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 44 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 2e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 7e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 41 1e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 3e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 38 8e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 37 0.002
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 37 0.003
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 36 0.003
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.006
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 34 0.014
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.014
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.014
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 34 0.018
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.024
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.024
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 33 0.024
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.042
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.042
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.042
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 32 0.074
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 31 0.097
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 31 0.17
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.39
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.39
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 29 0.52
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 28 0.91
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 28 0.91
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.91
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 0.91
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.6
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 27 2.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 2.1
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.1
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 2.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 3.7
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 4.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 6.4
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 73.7 bits (173), Expect = 2e-14
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Frame = +1
Query: 193 TSDKELRDHFSAYGEEN*EH*CKDRSKHGEVTRVCIHSFQSARFY**GMAAGEHTINSKK 372
T+D LRD+F +GE +D S G +F++ + M+ EH ++ K
Sbjct: 174 TTDDSLRDYFEQFGEVLDCTVMRD-STTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKI 231
Query: 373 VDPKKAKARH-----GKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFC 537
+DPK+A R K+FVGG+ + +++E +NFF+ FG +++ + DK + +GF
Sbjct: 232 IDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFG 291
Query: 538 FITFESEQVVNELLKTPKQTI 600
F+T+E+E V + P TI
Sbjct: 292 FVTYENESAVEATMSQPYITI 312
Score = 59.7 bits (138), Expect = 3e-10
Identities = 22/59 (37%), Positives = 42/59 (71%)
Frame = +1
Query: 403 GKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELL 579
GK+F+GGL+ E +DD ++++F FG +++ + D T + +GF F+TF++ + VNE++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 257 VKTDPNTGRSRGFAFIVFKAPDSIDKV 337
V D TGRSRGF F+ FK P +++V
Sbjct: 194 VMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 266 DPNTGRSRGFAFIVFKAPDSID 331
D +TGR RGF F+ ++ +++
Sbjct: 281 DKDTGRPRGFGFVTYENESAVE 302
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +1
Query: 349 EHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRK 528
E TI K + K + + G ++VG L + +++ +FS FG ++ + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 529 GFCFITFESEQVVNELLKT 585
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 2e-06
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELLK 582
++F+ L+ ++D++K+ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 44.4 bits (100), Expect = 1e-05
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1
Query: 379 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMP 501
P+ A + +FVGGLS +S++E+K F NFG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 245 ESINVKTDPNTGRSRGFAFIVF 310
+S + TDP T SRG+ F+ F
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRF 235
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/51 (31%), Positives = 32/51 (62%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQ 561
I++G L ++++D+I FS FG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 251 INVKTDPNTGRSRGFAFIVFK 313
IN+ D TG+S+GFAF+ ++
Sbjct: 60 INLVRDKETGKSKGFAFLKYE 80
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.9 bits (94), Expect = 7e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Frame = +1
Query: 349 EHTINSKKVDPKKAKARHGK-------IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFD 507
+H++++ K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 508 KTKNQRKGFCFITF--ESEQVVNELLK 582
KT ++KG+ F+ F V+++ LK
Sbjct: 127 KTSGRQKGYAFVEFINPKTDVISKALK 153
Score = 29.9 bits (64), Expect = 0.30
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 239 KIESINVKTDPNTGRSRGFAFIVFKAP 319
++ S+ + TD +GR +G+AF+ F P
Sbjct: 117 QVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +1
Query: 379 PKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 555
P+ ++ +FV G++S + +DE++ FS FG + V + + +GF F++F +
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRK----GFCFITFESEQVVNE 573
++FVG LS+ EI++ F G + +V +PF + + + G F+TF +++ V++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 574 LLKT 585
++T
Sbjct: 105 AIET 108
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
+FVG LS ++D++ F G+I + +P D + KGF ++TF
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 35.5 bits (78), Expect = 0.006
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 167 TKFCGAKLEHQTRNYVITSVLTVRKIESINVKTDPNTGRSRGFAFIVFKAPDSIDK 334
T F G + T + + T+ I+SI + TDP +GR +GF ++ F DS K
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQ 561
+FVG LS + D + F +G I+ + D + KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +2
Query: 242 IESINVKTDPNTGRSRGFAFIVFKAPDS 325
I V D +GRS+G+ ++ F+ P++
Sbjct: 289 IVGARVIMDGQSGRSKGYGYVDFETPEA 316
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +1
Query: 376 DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 555
DP K G +F+ L I + + + FS FG I+ ++ D+ N KG+ F+ F+S
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDS 217
Query: 556 EQVVNELLK 582
+ N ++
Sbjct: 218 VESANAAIE 226
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 242 IESINVKTDPNTGRSRGFAFIVFKAPDSIDK 334
I S + TD G+S+GF F+ + P+ +K
Sbjct: 390 ITSAKIMTDEQ-GKSKGFGFVCYTTPEEANK 419
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.3 bits (85), Expect = 8e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDK 510
+FVGGL+S +S+ +++ F FG I+ +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELL 579
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V++ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 242 IESINVKTDPNTGRSRGFAFIVFKAPDSIDK 334
I+ + + DP T +GFA+I FK +DK
Sbjct: 296 IDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 382 KKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
K+ + + V LS + ++E+++ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 242 IESINVKTDPNTGRSRGFAFIVF 310
I+ + + D TGR++GFAF+ +
Sbjct: 228 IQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF-ESEQVVNELL 579
++VG + ++ +E+++ F++ G++ V + DK KGF +I F E V N LL
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT-FESEQVVNEL 576
++VG LS ++++I FS G I + M D+ GFCF+ FE++ ++ L
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.006
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 346 GEHTINSKKV-DPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQ 522
GEHT + + +K + +++VG LS ++ E+K F GN++ E+ +
Sbjct: 46 GEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-LNLPNGL 104
Query: 523 RKGFCFITFESEQVVNELLKT 585
KG I + + + +KT
Sbjct: 105 SKGCAIIEYSTAEEARTAIKT 125
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK-NQRKGFCFITFESEQ 561
+I+VGGLSS I ++++ FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 34.3 bits (75), Expect = 0.014
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Frame = +1
Query: 361 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI-------------IEVEMP 501
NSK P + + I+VG + S +SD+EI FS +G + E P
Sbjct: 3 NSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKP 62
Query: 502 FDKTKNQRKGFCFITFESEQVVNELLKTPK 591
F KN + + F+ F + + + E+LK K
Sbjct: 63 FKPPKNGVQ-YGFVKFVNAESIEEVLKDAK 91
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.014
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 555
KI++ L + +D++ FG+++ ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 34.3 bits (75), Expect = 0.014
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNE 573
+FV L+ D++++ FS FG II ++ DK + FI F++++ V +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 33.9 bits (74), Expect = 0.018
Identities = 10/55 (18%), Positives = 30/55 (54%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVN 570
++FV +S ++ ++++ F +FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
+FVG L E +D ++K F G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 233 VRKIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVWQ 343
V +I + + T +TG+ +GF F+ F D+ K +
Sbjct: 251 VGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAME 287
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.024
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTP 588
+FV L E ++ E+ N F FG + ++ D ++ G FI F E+ L+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMA 338
Query: 589 KQ 594
Q
Sbjct: 339 SQ 340
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 188 LEHQTRNYVITSVLT-VRKIESINVKTDPNTGRSRGFAFIVF 310
L QT+ +T+ + V I+ V T+P TG +RG+ F+ F
Sbjct: 12 LAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +1
Query: 361 NSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCF 540
+ K ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 282 HDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 541 ITFESEQ 561
FE E+
Sbjct: 342 ACFEEEK 348
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
I V L+ ++ + I F +G I + MP K KG+C+I +
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEY 147
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 32.7 bits (71), Expect = 0.042
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVV 567
+FV L++ ++ E+ +FF G + + ++ DK + KG ++ F E V
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 32.7 bits (71), Expect = 0.042
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKN 519
+ V L S+IS++E+K FF + GNII + + D K+
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKD 628
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.9 bits (69), Expect = 0.074
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 382 KKAKARHGKIF-VGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
+ AK+ G I V G+ E +++++++ F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 31.5 bits (68), Expect = 0.097
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 430 SEISDDEIKNFFSNFGNIIEVEM---PFDKTKNQRKGFCFITFESEQVVNELL 579
S +++D + ++FSN G EVEM F+KT +G F + +Q + + L
Sbjct: 477 SNLTNDSVNSYFSNIGG-SEVEMKHSAFEKTLESSRGILFSLSQVQQALRQQL 528
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 242 IESINVKTDPNTGRSRGFAFIVFKAPDSI 328
+ SI + DP T RSRGF ++ F+ D++
Sbjct: 118 VTSIRLVIDPLTERSRGFGYVEFETADTL 146
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.39
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +1
Query: 337 MAAGEHTINSKKVDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTK 516
M A E K KK + I+VG L S ++ F FGN + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 517 NQRKG------FCFITFESE 558
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 409 IFVGGLSSEI--SDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFIT----FESEQVVN 570
+FV L I + +++ FS FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 571 EL 576
L
Sbjct: 481 TL 482
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.5 bits (63), Expect = 0.39
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
++VG + E++++++ + F G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 29.1 bits (62), Expect = 0.52
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITF 549
+FVG + ++S+ ++ F+ G + ++ D KG+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 182 AKLEHQTRNYVITSVLT-VRKIESINVKTDPNTGRSRGFAFIVFK 313
++L + T+ I T IE I V + TG+S G+AF+VF+
Sbjct: 105 SRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 155 GREMTKFCGAKLEHQTRNYVITSVLTVRKIESINVKT 265
G +T+ CG ++E + VIT V +E NVK+
Sbjct: 304 GLNITRQCGIEVEDEEEGAVITKPTLVDALEGYNVKS 340
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 0.91
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 278 GRSRGFAFIVFKAPDSIDKVWQ 343
G++RGF F+ FK D K W+
Sbjct: 67 GKTRGFGFVSFKDSDQFLKAWR 88
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/58 (18%), Positives = 29/58 (50%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 582
+FVG L + + + + FS G +++ + KG+ F++++S + + ++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIE 158
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 439 SDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLKTPK 591
+++ I++FFS FG + +VE+ N C + F S + N +P+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 427 SSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFES 555
+ +++D +++ +S+FG + V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.1
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = +1
Query: 373 VDPKKAKARHGKIFVGGLSSEISDDEIKNFFSNFGNI 483
+ P K +F+GG++ + + +++ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 560 CSDSNVMKQNPFLWFFVLSKGISTSIIFPKLLKKFFISSSEI 435
CS SN +K + +L+ L+ G+ + P+LL + S+I
Sbjct: 7 CSSSNTIKVSIYLFLHTLTYGLLNYHLNPRLLASTGVVESDI 48
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 498
+F+G L S + EI+ F FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEM 498
+F+G L + I++DEI+ FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIKNFFSNFGNIIEVEMPFDKTKNQRKGFCFITFESEQVVNELLK 582
I+VG L S++E+K FS + + F +TK CF+ FE+ E LK
Sbjct: 428 IYVGNLPPSTSEEELKVLFST--QVGYKRLCF-RTKGNGP-MCFVEFENIPYAMEALK 481
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/31 (22%), Positives = 21/31 (67%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIKNFFSNFGNIIEVEM 498
++FVG + + + +++ +FF +G I++ ++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL 35
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 185 KLEHQTRNYVITSVLTVRKIESINVKTDPNTGRS 286
K E T+ YVI++ + + E K+ PNTG S
Sbjct: 641 KSEKDTKGYVISNDDSTQVEEDSEDKSTPNTGAS 674
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 224 VLTVRKIESINVKTDPNTGRSRGFAFIVFKAPDSIDKVWQ 343
V ++ + +++ PN GRS+G A I+F P + ++
Sbjct: 76 VKSIGPCKRVSLAYGPN-GRSKGIATIIFSRPGDATRAYE 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,521
Number of Sequences: 5004
Number of extensions: 51776
Number of successful extensions: 206
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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