Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N13
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    40   2e-05
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.10 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 29/118 (24%), Positives = 54/118 (45%)
 Frame = +2

Query: 215 KVAVVTGANKGIGFGIVRGLCKRFDGVVYLNFTRTKERGRKAVADLNKENIHPNYHQLDI 394
           +VA+VTGAN GIG  ++  L  +  G+  +      ++ +  V +L  +       Q D+
Sbjct: 8   EVALVTGANSGIGKCLIECLVGK--GMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDL 65

Query: 395 TDRKSVETFRDYIKNKYDGIDILVNNAAIAFKHNSTEPAAVQAKETLFVNYFSLLSTC 568
           +++  +    ++++     IDIL+NNA I           +  K+   +N   L  TC
Sbjct: 66  SNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGL--TC 121


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 0.10
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +2

Query: 281 RFDGVVYLNFTRTKERGRKAVADLNKENI-----HPNYHQLDITDRKSVETFRDYIKNKY 445
           + DG  Y    RTK+  + A A+L   NI      P  HQ   T + S+    D+  +  
Sbjct: 69  QIDGQTYEGKGRTKKMAKHAAAELALRNIVQFRNTPEVHQAINTCQPSIPLEPDFTSDVT 128

Query: 446 DGIDILVNNAAIAFKHNSTEP 508
           +  + LVN    AFK  + EP
Sbjct: 129 ERDNHLVN----AFKTLTQEP 145


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 297 TTPSKRLQSPLTIPNPMPLLAPV 229
           T PS    SP+  P+P+ L  PV
Sbjct: 436 TPPSSNPVSPVPSPDPLDLAIPV 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,652
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)