Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N12
(524 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 155 4e-39
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 155 4e-39
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 32 0.046
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.11
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 28 0.98
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 27 1.3
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 27 2.3
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 26 3.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 6.9
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 155 bits (376), Expect = 4e-39
Identities = 70/113 (61%), Positives = 88/113 (77%)
Frame = +1
Query: 88 MDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 267
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 268 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 426
Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 155 bits (376), Expect = 4e-39
Identities = 74/129 (57%), Positives = 95/129 (73%)
Frame = +1
Query: 40 DVDVEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAEN 219
+V+VE A +S V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+
Sbjct: 16 EVEVEAAAPETVS-----VEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCES 70
Query: 220 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFG 399
CD+ AY KLV+ALC E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+G
Sbjct: 71 CDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYG 130
Query: 400 EETPALDVL 426
E++ AL L
Sbjct: 131 EDSAALQKL 139
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 32.3 bits (70), Expect = 0.046
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 94 VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 273
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 274 IPLVKVDNNKKLGE 315
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.11
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 151 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 312
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 0.98
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -3
Query: 456 GLT*RLEVVFEYVQRWRLLTEILDNYARATDDFPSL 349
G++ RLE VF + + +L+ + +DN+ + T +F +L
Sbjct: 529 GVSSRLEEVFAFAKDQKLVKKSIDNFLQLTVNFENL 564
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 352 PCRLCRFYRDRPIRRASYCYRP 287
PC LC F R +P+R+ + RP
Sbjct: 441 PCSLCGFNRTQPLRQFEFRSRP 462
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 408 RLLTEILDNYARATDDFPSLAVFVD 334
R+L L NYA+ DD SL+ F+D
Sbjct: 84 RILAFALLNYAKNIDDLTSLSAFMD 108
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 49 VEVPANPVLSGGAMDVNTALQEVLKTALIHGGLVHGLH 162
+E+ P LS A D + + VL L+HGG +HG H
Sbjct: 445 LEIDLEPYLSETA-DKSESHVYVLHGVLVHGGDLHGGH 481
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 281 LLRSITIRSSANGPVSVKSTKTARLGKSSVALA*LSRISVRR 406
L+R++ ++SANG V V GKSS+ L L +++R+
Sbjct: 132 LIRTLVDQASANGRVYVYFVGMPNTGKSSI-LNSLRNVALRK 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,925
Number of Sequences: 5004
Number of extensions: 38558
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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