Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N12
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 147 5e-36
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.041
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 35 0.041
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 35 0.041
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 2.0
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 2.0
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 2.7
U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 3.6
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 3.6
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 27 8.2
U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 147 bits (356), Expect = 5e-36
Identities = 72/135 (53%), Positives = 90/135 (66%), Gaps = 1/135 (0%)
Frame = +1
Query: 34 MADVDVEVPANPV-LSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 210
M+D +V P ++ G MD AL+ VL+ A GL GLHE KALDKR+A CVL
Sbjct: 1 MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60
Query: 211 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 390
AENCDE Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS V+
Sbjct: 61 AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120
Query: 391 DFGEETPALDVLKDY 435
++G E +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.041
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 145 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 312
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 34.7 bits (76), Expect = 0.041
Identities = 11/61 (18%), Positives = 28/61 (45%)
Frame = +2
Query: 179 WTRGKLSYVYWLRTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 358
W + + S+ +W R + P+K + + V + +H+ ++ P+ K + +G
Sbjct: 87 WPKNRHSFYFWARRPYKMPSKKVIKKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIG 146
Query: 359 K 361
+
Sbjct: 147 Q 147
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 34.7 bits (76), Expect = 0.041
Identities = 11/61 (18%), Positives = 28/61 (45%)
Frame = +2
Query: 179 WTRGKLSYVYWLRTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 358
W + + S+ +W R + P+K + + V + +H+ ++ P+ K + +G
Sbjct: 87 WPKNRHSFYFWARRPYKMPSKKVIKKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIG 146
Query: 359 K 361
+
Sbjct: 147 Q 147
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 151 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 312
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 151 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 312
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 262 NEHQIPLVKVDNNKKLGEWAGLCK 333
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U39741-3|AAA80430.1| 163|Caenorhabditis elegans Hypothetical
protein F12D9.2 protein.
Length = 163
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 91 DVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQ 252
D+NT++ LKT + G L A +AL KR L +L D A KK+ Q
Sbjct: 54 DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ 105
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 163 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 327
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 139 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 246
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 325 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 432
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>Z81589-2|CAB04724.1| 728|Caenorhabditis elegans Hypothetical
protein T08G5.2 protein.
Length = 728
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 423 YVQRWRLLTEILDNYARATDDFPS 352
++Q W L +I+ N+ AT FPS
Sbjct: 563 HIQTWMLNVKIVANFTSATKSFPS 586
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 182 TRGKLSYVYWLRTVTRQPTKSLFRLSVMNIKSHLLRSITIRSSANGPVSV 331
T G + + RTV + F +++ N+KSHL SI SANG V +
Sbjct: 1300 TDGFIPPISDFRTVINTTSSGSFVVNLRNLKSHLALSI----SANGYVQI 1345
>U13070-1|AAK67224.1| 730|Caenorhabditis elegans Hypothetical
protein F01F1.7 protein.
Length = 730
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = +1
Query: 94 VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 273
+++A++ + + L +VH + A K ++ + V+ ++ E + KKLV+ L ++ Q
Sbjct: 518 MSSAIERLARQYLRRPAVVH-IGSAGKPTERVEQVVYMVPE---DRKRKKLVEVLESQFQ 573
Query: 274 IPLVKVDNNKK 306
P++ N KK
Sbjct: 574 PPIIIFVNQKK 584
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,959,635
Number of Sequences: 27780
Number of extensions: 224725
Number of successful extensions: 643
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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