Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N11
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 29 0.17
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 0.93
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 1.6
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 2.8
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 2.8
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 2.8
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 3.7
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 25 4.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 4.9
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 24 6.5
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 24 8.6
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 24 8.6
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 24 8.6
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 24 8.6
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 24 8.6
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 29.5 bits (63), Expect = 0.17
Identities = 14/39 (35%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +3
Query: 165 MSERSSQKEKEV--LQRKGEELESLVAGKERVKQQL*QR 275
+S SS +E E+ L+ +GEE+E ++ +ER+K++ Q+
Sbjct: 60 ISSESSDEEAELKKLEEEGEEVEKILRDEERIKKRKIQK 98
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 0.93
Identities = 10/29 (34%), Positives = 23/29 (79%)
Frame = +3
Query: 180 SQKEKEVLQRKGEELESLVAGKERVKQQL 266
+QK+ E L+++ EE+E + GKE++++++
Sbjct: 119 TQKQIEDLKKEKEEMEGSLQGKEKLEREV 147
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 1.6
Identities = 19/77 (24%), Positives = 31/77 (40%)
Frame = -2
Query: 319 SSSSGEGRIATXXXXXXXXXXXXXSFPATKDSNSSPFLCSTSFSFWELLSDMSLLSKANY 140
SSSS ++ S ++ S+S P STS S S S S ++
Sbjct: 174 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233
Query: 139 LVAPCTFISLTAVSAFL 89
+ +FI+ + S F+
Sbjct: 234 PSSSSSFITTMSSSTFI 250
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 146 KLPRCSLHLYQPHRRVRLSGIK 81
+L R LH Y P ++LSGIK
Sbjct: 725 RLLRLLLHSYSPEHLLKLSGIK 746
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 2.8
Identities = 7/31 (22%), Positives = 19/31 (61%)
Frame = -1
Query: 155 FESKLPRCSLHLYQPHRRVRLSGIKAHFYFF 63
++ + R ++H+YQ ++ ++ + +H Y F
Sbjct: 337 YDRQASRYNVHIYQKKKQELIASVDSHLYVF 367
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 149 SKLPRCSLHLYQPHRRVRLSGIKAH 75
SKLP C L +P R V S +K++
Sbjct: 225 SKLPNCDTFLLRPLREVLSSDLKSY 249
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/65 (20%), Positives = 33/65 (50%)
Frame = +3
Query: 156 RRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAILPSPEDEEGWKHW 335
R L + Q++++ Q++ ++ + +++ +QQ Q+Q A P+P+ G +
Sbjct: 251 RSLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQKQAPQNAFFPNPQGNVGAQSL 310
Query: 336 RNGDP 350
++ P
Sbjct: 311 QSMSP 315
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 68 NKSGPLYQKGGHGGEADKGARSNEVI 145
+ +GP++QK GHG + S V+
Sbjct: 138 HNAGPIFQKQGHGSLVATASMSGVVV 163
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESL 233
E+ + E+ S +EK++L KG ELESL
Sbjct: 937 EQNELKEKLSLEEKDLLDTKG-ELESL 962
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 168 SERSSQKEKEVLQRKGEEL 224
SER +K+KE +++K EEL
Sbjct: 459 SERELEKKKEQVEKKQEEL 477
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 23.8 bits (49), Expect = 8.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAIL 299
Q+EKE +R EE L +ER +Q +RQ + +L
Sbjct: 877 QREKEKARRLAEEEALLKEKQERERQLQEERQKMQEEVL 915
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +3
Query: 183 QKEKEVLQRKGEEL 224
+KEKE LQRK EEL
Sbjct: 119 EKEKEDLQRKMEEL 132
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = -2
Query: 322 PSSSSGEGRIATXXXXXXXXXXXXXSFPATKDSNSSPFLCST 197
P S G+ T SFP+ + S +SPFL T
Sbjct: 711 PHRSPFSGQAFTGMGLSNYSLMSSSSFPSAQSSPTSPFLSGT 752
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 23.8 bits (49), Expect = 8.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 12 KITYLFLDVQGDLEKIGEKIKVGLYTRKADTAVRLIKVQGA 134
K+ Y+F+D++ DL+ + +K L + V I+ G+
Sbjct: 162 KVLYVFVDIKIDLQHVVSSLKHNLPSNSRLALVGTIQFVGS 202
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 50 QVSLNV*EEIGDFFP 6
++SL V E++GDFFP
Sbjct: 354 RLSLTVVEQMGDFFP 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,649
Number of Sequences: 5004
Number of extensions: 25531
Number of successful extensions: 95
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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