Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N11
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 31 0.28
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 28 2.0
04_03_0940 - 20943986-20944216,20944301-20944500,20944506-20944791 28 2.6
08_02_0833 - 21623721-21623821,21624076-21624667 27 3.5
06_01_0267 - 1972988-1973148,1973275-1973403,1973881-1974024,197... 27 4.6
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 27 4.6
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 27 4.6
09_06_0347 + 22445962-22446154,22446495-22446616,22446764-224468... 27 6.1
01_01_0091 - 719842-720902,721042-721071,721521-722226 27 6.1
12_02_0337 + 17709451-17710077,17710167-17710985 26 8.1
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 8.1
03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421 26 8.1
01_07_0047 + 40731508-40731714,40731834-40731893,40731992-407321... 26 8.1
01_05_0342 - 21147940-21148213,21149626-21149697,21150273-211503... 26 8.1
01_03_0181 + 13523172-13524641 26 8.1
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 31.1 bits (67), Expect = 0.28
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +3
Query: 99 DTAVRLIKVQG---ATR*FAFERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL* 269
+TA RL+K +G ++ A +RR S+KEK+ Q + E KER QL
Sbjct: 292 ETAARLVKKRGQLHSSGLSANKRRFTVGEDSEKEKDDSQMEDVEKCKEDEEKERDDSQLE 351
Query: 270 QRQLIDVAIL---PSPEDEEGWKHWRNGD 347
I +L SPE E + WR G+
Sbjct: 352 NVDSIRTFLLQDSTSPEGESVRRMWRKGN 380
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 23 SLPRRSRRPGEDWGKNKSGPLYQKGGHGGEADKGARSNEV 142
S+PRRS R D N + + Q GG+G + G R + V
Sbjct: 304 SVPRRSARLSRDTTINSNSNISQFGGNGTDHSSGNRYHVV 343
>04_03_0940 - 20943986-20944216,20944301-20944500,20944506-20944791
Length = 238
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 53 EDWGKNKSGPLYQKGGHGGEADK 121
E +G+NKSG GG G EAD+
Sbjct: 99 EKYGRNKSGDDEYSGGGGAEADE 121
>08_02_0833 - 21623721-21623821,21624076-21624667
Length = 230
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 32 RRSRRPGEDWGKNKSGPLYQKGGHGGE-ADKGARSNEV 142
RR RR G WG+ + HGGE A +G EV
Sbjct: 115 RRERRSGVSWGRKREREAGGGRQHGGEVAMEGGYEEEV 152
>06_01_0267 -
1972988-1973148,1973275-1973403,1973881-1974024,
1974368-1974493,1974595-1974720,1975149-1975241,
1975465-1975606,1976747-1976878,1976943-1977080,
1977431-1977523,1978186-1978389,1978568-1978656,
1978839-1978988,1979088-1979253,1979355-1979576,
1979687-1979872,1980289-1980411,1980511-1980611,
1982005-1982155
Length = 891
Score = 27.1 bits (57), Expect = 4.6
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 29 PRRSRRPGEDWGKNKSGPLYQKGGHGGEA 115
PR S G + + SGPL GG GG A
Sbjct: 17 PRLSAAGGGAYRRTSSGPLPSAGGGGGRA 45
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 27.1 bits (57), Expect = 4.6
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 23 SLPRRSRRPGEDWGKNKSGPLYQKGGHGGEADKGARSNEVICFRKEAHVGKKL 181
S P R GE G++ SGP QK G ++ R R + + KK+
Sbjct: 156 SSPPRPLPSGESCGQDGSGPFSQKVGRYSAEERKERIERYRVKRHQRNFNKKI 208
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.1 bits (57), Expect = 4.6
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAILPSPEDE 317
QKE+E +QR +LE A E K++ Q Q D+AI + DE
Sbjct: 439 QKEREEIQRIKSDLEKEKAFFEEEKREAIQAQQ-DLAITQADRDE 482
>09_06_0347 +
22445962-22446154,22446495-22446616,22446764-22446885,
22447405-22447594,22447874-22448014,22448257-22448724,
22448842-22449609,22450185-22450373
Length = 730
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 168 SERSSQKEKEVLQRKGE---ELESLVAGKERVKQQ 263
S+R S KEKE + +GE EL+ + ERV+Q+
Sbjct: 201 SDRYSDKEKEDTKERGESDNELQHIPMQLERVRQE 235
>01_01_0091 - 719842-720902,721042-721071,721521-722226
Length = 598
Score = 26.6 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -2
Query: 226 SNSSPFLCSTSFSFWELLSDMSLLSKANYLVAPCTFISL 110
S S F+ ++ S + +S +S S++ YLVAP F+S+
Sbjct: 114 SCSEEFIWDSTDSIFGPISCLSNASQSLYLVAPYAFVSI 152
>12_02_0337 + 17709451-17710077,17710167-17710985
Length = 481
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 80 PLYQKGGHGGEADKGA 127
P YQ+GG+GGEA A
Sbjct: 462 PFYQQGGNGGEATYAA 477
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 8 GKNHLSLPRRSRRPGEDWGKNKSGPL 85
G HL PRR+RR G G S PL
Sbjct: 9 GNGHLPRPRRARRGGGGGGGMGSPPL 34
>03_02_0433 + 8398455-8399601,8399677-8399976,8400085-8401421
Length = 927
Score = 26.2 bits (55), Expect = 8.1
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +3
Query: 111 RLIKVQGATR*FAFERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
RL + + A + A + + M E S+ ++E LQ L LV +ER KQ+L +R+L
Sbjct: 600 RLQEEKAAMQMEALQYQRMMEEQSEYDQEALQL----LNELVTKREREKQEL-EREL 651
>01_07_0047 +
40731508-40731714,40731834-40731893,40731992-40732159,
40732198-40732203,40732898-40732961,40733395-40733690,
40733799-40733903,40734030-40734066,40734309-40734403,
40735226-40735282,40735361-40735438,40735527-40735586
Length = 410
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 171 ERSSQKEKEVLQRKGEELESLV 236
ERS+++ E+L R+G ELE+ V
Sbjct: 99 ERSAKQTTEILHRRGMELEAQV 120
>01_05_0342 -
21147940-21148213,21149626-21149697,21150273-21150397,
21150625-21150684,21150824-21150902,21151041-21151126,
21151224-21151544
Length = 338
Score = 26.2 bits (55), Expect = 8.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 291 AILPSPEDEEGWKHWRNGDPGKHTY 365
AI E+EEG+ W NGD ++ +
Sbjct: 62 AIEEEEEEEEGFPEWGNGDEDEYDH 86
>01_03_0181 + 13523172-13524641
Length = 489
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 44 RPGEDWGKNKSGPLYQKGGHGGEADKGARSNEVICF 151
RP E WG+ + +GG GG A E++ F
Sbjct: 387 RPDEYWGETPCAFVKLRGGGGGGGGGAAVEEELMAF 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,569,065
Number of Sequences: 37544
Number of extensions: 202546
Number of successful extensions: 843
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -