Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N11
(368 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC040301-1|AAH40301.1| 773|Homo sapiens PAS domain containing 1... 31 1.2
AY623425-1|AAT49049.1| 305|Homo sapiens hypothetical protein LO... 31 1.2
AY270020-1|AAQ01136.1| 639|Homo sapiens PAS domain containing p... 31 1.2
AK097552-1|BAC05097.1| 773|Homo sapiens protein ( Homo sapiens ... 31 1.2
Y15164-1|CAA75436.1| 1012|Homo sapiens Cxorf5 (71-7A) protein pr... 30 2.7
BC099659-1|AAH99659.1| 550|Homo sapiens OFD1 protein protein. 30 2.7
BC099658-1|AAH99658.1| 550|Homo sapiens OFD1 protein protein. 30 2.7
BC096344-1|AAH96344.1| 972|Homo sapiens OFD1 protein protein. 30 2.7
X76732-1|CAA54148.1| 420|Homo sapiens NEFA protein protein. 28 8.2
J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein. 28 8.2
BC039821-1|AAH39821.1| 478|Homo sapiens disrupted in renal carc... 28 8.2
AK075158-1|BAC11440.1| 411|Homo sapiens protein ( Homo sapiens ... 28 8.2
AK027690-1|BAB55300.1| 478|Homo sapiens protein ( Homo sapiens ... 28 8.2
AF450266-1|AAM73810.1| 419|Homo sapiens NUCB2 protein protein. 28 8.2
AF052644-1|AAC06302.1| 420|Homo sapiens DNA binding protein NEF... 28 8.2
AF052643-1|AAC06301.1| 420|Homo sapiens DNA binding protein NEF... 28 8.2
AF052642-1|AAC06300.1| 420|Homo sapiens DNA binding protein NEF... 28 8.2
AB231311-1|BAE78964.1| 390|Homo sapiens Nucb2 splice variant pr... 28 8.2
>BC040301-1|AAH40301.1| 773|Homo sapiens PAS domain containing 1
protein.
Length = 773
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAILPSPEDEEGWKH 332
+R++ ++ Q++K++ ++K +E + L + + K++L +R+ +L +EE K
Sbjct: 506 QRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQMLQKEPEEEQQKQ 565
Query: 333 WRNGDPGKH 359
P KH
Sbjct: 566 QLQEQPLKH 574
>AY623425-1|AAT49049.1| 305|Homo sapiens hypothetical protein
LOC139135 protein.
Length = 305
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAILPSPEDEEGWKH 332
+R++ ++ Q++K++ ++K +E + L + + K++L +R+ +L +EE K
Sbjct: 38 QRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQMLQKEPEEEQQKQ 97
Query: 333 WRNGDPGKH 359
P KH
Sbjct: 98 QLQEQPLKH 106
>AY270020-1|AAQ01136.1| 639|Homo sapiens PAS domain containing
protein 1 protein.
Length = 639
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAILPSPEDEEGWKH 332
+R++ ++ Q++K++ ++K +E + L + + K++L +R+ +L +EE K
Sbjct: 506 QRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQMLQKEPEEEQQKQ 565
Query: 333 WRNGDPGKH 359
P KH
Sbjct: 566 QLQEQPLKH 574
>AK097552-1|BAC05097.1| 773|Homo sapiens protein ( Homo sapiens
cDNA FLJ40233 fis, clone TESTI2023085, weakly similar to
CIRCADIAN LOCOMOTER OUTPUT CYCLES KAPUT PROTEIN. ).
Length = 773
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/69 (23%), Positives = 37/69 (53%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL*QRQLIDVAILPSPEDEEGWKH 332
+R++ ++ Q++K++ ++K +E + L + + K++L +R+ +L +EE K
Sbjct: 506 QRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQMLQKEPEEEQQKQ 565
Query: 333 WRNGDPGKH 359
P KH
Sbjct: 566 QLQEQPLKH 574
>Y15164-1|CAA75436.1| 1012|Homo sapiens Cxorf5 (71-7A) protein
protein.
Length = 1012
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL 266
ERR ER +EVL+R+ ELE L ++ +++ L
Sbjct: 889 ERRQREERRQSNLQEVLERERRELEKLYQERKMIEESL 926
>BC099659-1|AAH99659.1| 550|Homo sapiens OFD1 protein protein.
Length = 550
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL 266
ERR ER +EVL+R+ ELE L ++ +++ L
Sbjct: 427 ERRQREERRQSNLQEVLERERRELEKLYQERKMIEESL 464
>BC099658-1|AAH99658.1| 550|Homo sapiens OFD1 protein protein.
Length = 550
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL 266
ERR ER +EVL+R+ ELE L ++ +++ L
Sbjct: 427 ERRQREERRQSNLQEVLERERRELEKLYQERKMIEESL 464
>BC096344-1|AAH96344.1| 972|Homo sapiens OFD1 protein protein.
Length = 972
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 153 ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL 266
ERR ER +EVL+R+ ELE L ++ +++ L
Sbjct: 849 ERRQREERRQSNLQEVLERERRELEKLYQERKMIEESL 886
>X76732-1|CAA54148.1| 420|Homo sapiens NEFA protein protein.
Length = 420
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
QK+KE LQR+ ++LE+ +V QQ+ Q++L
Sbjct: 369 QKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKL 401
>J04177-1|AAA51891.1| 1806|Homo sapiens COL11A1 protein.
Length = 1806
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 47 PGEDWGKNKSGPLYQKGGHGGEADKG 124
PGED K + G QKG GG+ + G
Sbjct: 1122 PGEDGDKGEIGEPGQKGSKGGKGENG 1147
>BC039821-1|AAH39821.1| 478|Homo sapiens disrupted in renal
carcinoma 2 protein.
Length = 478
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 223 NSSPFLCSTSFSFWELLSDMSLLSKANYLVAPCTFI 116
N++PFL +T FS E + ++ S +YL C F+
Sbjct: 164 NAAPFLSTTWFSADERATATAIASMLSYLGGACAFL 199
>AK075158-1|BAC11440.1| 411|Homo sapiens protein ( Homo sapiens
cDNA FLJ90677 fis, clone PLACE1005725. ).
Length = 411
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 223 NSSPFLCSTSFSFWELLSDMSLLSKANYLVAPCTFI 116
N++PFL +T FS E + ++ S +YL C F+
Sbjct: 164 NAAPFLSTTWFSADERATATAIASMLSYLGGACAFL 199
>AK027690-1|BAB55300.1| 478|Homo sapiens protein ( Homo sapiens
cDNA FLJ14784 fis, clone NT2RP4000713. ).
Length = 478
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 223 NSSPFLCSTSFSFWELLSDMSLLSKANYLVAPCTFI 116
N++PFL +T FS E + ++ S +YL C F+
Sbjct: 164 NAAPFLSTTWFSADERATATAIASMLSYLGGACAFL 199
>AF450266-1|AAM73810.1| 419|Homo sapiens NUCB2 protein protein.
Length = 419
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
QK+KE LQR+ ++LE+ +V QQ+ Q++L
Sbjct: 369 QKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKL 401
>AF052644-1|AAC06302.1| 420|Homo sapiens DNA binding protein NEFA
precursor protein.
Length = 420
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
QK+KE LQR+ ++LE+ +V QQ+ Q++L
Sbjct: 369 QKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKL 401
>AF052643-1|AAC06301.1| 420|Homo sapiens DNA binding protein NEFA
precursor protein.
Length = 420
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
QK+KE LQR+ ++LE+ +V QQ+ Q++L
Sbjct: 369 QKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKL 401
>AF052642-1|AAC06300.1| 420|Homo sapiens DNA binding protein NEFA
precursor protein.
Length = 420
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
QK+KE LQR+ ++LE+ +V QQ+ Q++L
Sbjct: 369 QKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKL 401
>AB231311-1|BAE78964.1| 390|Homo sapiens Nucb2 splice variant
protein.
Length = 390
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 183 QKEKEVLQRKGEELESLVAGKERVKQQL*QRQL 281
QK+KE LQR+ ++LE+ +V QQ+ Q++L
Sbjct: 339 QKQKEELQRQHDQLEAQKLEYHQVIQQMEQKKL 371
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,586,577
Number of Sequences: 237096
Number of extensions: 1064214
Number of successful extensions: 3952
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3952
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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