Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N11
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    31   0.34 
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    29   1.0  
AL023858-2|CAE18058.1|  158|Caenorhabditis elegans Hypothetical ...    29   1.0  
AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical ...    27   3.2  
AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    27   3.2  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    27   3.2  
Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protei...    26   7.3  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    26   9.7  

>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 153  ERRLMSERSSQKEKEVLQRKGEELESLVAGKERVKQQL 266
            E+R   ER  ++ +E+++RK  E +  +A K ++ QQL
Sbjct: 1014 EKREEKERKEREIREIMERKKREEDDRIAAKLQIAQQL 1051


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 8   GKNHLSLPRRSRRPGEDWGKNKSGPLYQKGGHGGEADKG 124
           G N  S   R  +   ++  N+ G  YQ+  HG + D+G
Sbjct: 96  GNNGRSADNRYSQSNYNYDSNRGGQHYQRDNHGSKDDRG 134


>AL023858-2|CAE18058.1|  158|Caenorhabditis elegans Hypothetical
           protein ZK285.2 protein.
          Length = 158

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 5   EGKNHLSLPRRSRRPGEDWGKNKSGPLYQKGGHGGEADKG 124
           +GKN  S  RR R      G+ KSG     GG GG    G
Sbjct: 63  DGKNDFSSSRRKRDSSSGSGEGKSGGGGGAGGAGGAGGAG 102


>AL110479-9|CAB60315.3|  583|Caenorhabditis elegans Hypothetical
           protein Y105C5B.11 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 153 ERRLMSERSSQKE-KEVLQRKGEELESLVAGKERVKQQ 263
           E++L +E+ + KE +E  ++K EEL++ +  KER  Q+
Sbjct: 448 EKKLSAEKRAFKENQETWEKKLEELQTELQAKERTIQE 485


>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 199 TSFSFWELLSDMSLLSKANYLVAPCTFIS 113
           T  S   +++D+ +LSK NYLV  CTF S
Sbjct: 430 TDASLMGVITDIYILSKVNYLV--CTFSS 456


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 199 TSFSFWELLSDMSLLSKANYLVAPCTFIS 113
           T  S   +++D+ +LSK NYLV  CTF S
Sbjct: 430 TDASLMGVITDIYILSKVNYLV--CTFSS 456


>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 163 SLLSKANYLV-APCTFISLTAVSAFLV*RPTFIFSPIFS 50
           + LSKA ++V + CT+ +  ++  FL+     +FS +FS
Sbjct: 415 TFLSKAEFIVLSNCTYETSQSIHKFLICNNATLFSNVFS 453


>U55373-5|AAC25888.1|  289|Caenorhabditis elegans Collagen protein
           140, isoform a protein.
          Length = 289

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 29  PRRSRRPGEDWGKNKSGPLYQKGGHGGEADKGARSN 136
           P +  RPG    + ++GP  Q G  G + + G   N
Sbjct: 213 PGQPGRPGPPGPRGEAGPAGQPGSPGNDGESGKPGN 248


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 29  PRRSRRPGEDWGKNKSGPLYQKGGHGGEADKGA 127
           P    RPG+   +  +G   + G  GG  +KGA
Sbjct: 208 PGEPGRPGQPGSRGPAGQPGKDGAQGGPGEKGA 240


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 32  RRSRRPGEDWGKNKSGPLYQKGGHGGEADKG 124
           R   R G DWG N  G     G  GG  D G
Sbjct: 59  RGGGRGGGDWGGNNGGGGNWGGNGGGRGDWG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,293,153
Number of Sequences: 27780
Number of extensions: 150105
Number of successful extensions: 744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)