Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N11
         (368 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   8.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   8.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   8.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 235 TKDSNS-SPFLCSTSFSFWELLSDMSLLSKANYLV 134
           TK S     ++   ++S W L  D +L +K NY +
Sbjct: 190 TKTSGKYKEYIIPANYSGWYLNHDYNLENKLNYFI 224


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 74  SGPLYQKGGHGGEA 115
           SGP Y+   +GG+A
Sbjct: 5   SGPSYEAFSYGGQA 18


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 15  ITYLFLDVQGDLEKIGEKIKVGLYTRKADTAVRLIKV 125
           ITY++ + +G L K      +  Y  K  T    IKV
Sbjct: 214 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKV 250


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 15  ITYLFLDVQGDLEKIGEKIKVGLYTRKADTAVRLIKV 125
           ITY++ + +G L K      +  Y  K  T    IKV
Sbjct: 214 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKV 250


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 15  ITYLFLDVQGDLEKIGEKIKVGLYTRKADTAVRLIKV 125
           ITY++ + +G L K      +  Y  K  T    IKV
Sbjct: 265 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKV 301


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 15  ITYLFLDVQGDLEKIGEKIKVGLYTRKADTAVRLIKV 125
           ITY++ + +G L K      +  Y  K  T    IKV
Sbjct: 214 ITYVWKNDEGTLRKSPSLTSLNAYLIKNQTITCPIKV 250


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 98  RLSGIKAHFYFFPNL 54
           +LSGI    Y +PN+
Sbjct: 517 QLSGISPRNYMYPNI 531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,422
Number of Sequences: 438
Number of extensions: 2124
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)