Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N10
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    31   0.11 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   2.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   4.2  

>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 30.7 bits (66), Expect = 0.11
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 32  LYNPIATRCYEQVICVCHEHRHLGPNRTLLRKKNGFNIRPDR 157
           L N IA+ C+E VI   H    L   + +LR KNG +   +R
Sbjct: 79  LVNKIASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAER 120


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 278  D*DILKEKICAADDDESSQA 337
            D D+L+ ++CA  DDE+S +
Sbjct: 1312 DIDLLRRRLCAKSDDETSSS 1331


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 95  HLGPNRTLLRKKNGFNIRPDRP----VLTRTYLTTHYI 196
           H   NR ++   N   I P +P    VL   YLT+HY+
Sbjct: 35  HADSNRGVVNSSNLIIIPPYKPKSKSVLRSPYLTSHYV 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,203
Number of Sequences: 5004
Number of extensions: 38053
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)