Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N10
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    31   0.30 
U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical pr...    28   2.8  
L14730-1|AAB37563.2|  351|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U80836-2|AAV58890.1|  454|Caenorhabditis elegans Abnormal catech...    27   5.0  
U80836-1|AAV58889.1|  393|Caenorhabditis elegans Abnormal catech...    27   5.0  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 301 NMCCGRRRIFTGCSPAETSSCR 366
           N CCG+R +F G S   T +CR
Sbjct: 215 NRCCGKRDVFDGSSSNRTQTCR 236



 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 301 NMCCGRRRIFTGCSPAETSSCR 366
           N CC +R +F G S   T +CR
Sbjct: 299 NRCCAKRDVFEGFSNNRTQTCR 320



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 301 NMCCGRRRIFTGCSPAETSSCR 366
           N CC +R +F G S     +CR
Sbjct: 131 NRCCAKRDVFDGSSSNRNETCR 152



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 301 NMCCGRRRIFTGCSPAETSSCR 366
           N CC +R +  G S   T +CR
Sbjct: 257 NRCCAKRDVIDGSSSNRTQTCR 278


>U80444-7|AAO12447.1|  380|Caenorhabditis elegans Hypothetical
           protein F26B1.2c protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 292 ERKNMCCGRRRIFTGCSPAET 354
           E +  C  R +IFTGC+P  T
Sbjct: 132 ELREKCSARLKIFTGCAPGST 152


>U80444-5|AAB37791.1|  397|Caenorhabditis elegans Hypothetical
           protein F26B1.2a protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 292 ERKNMCCGRRRIFTGCSPAET 354
           E +  C  R +IFTGC+P  T
Sbjct: 149 ELREKCSARLKIFTGCAPGST 169


>L14730-1|AAB37563.2|  351|Caenorhabditis elegans Hypothetical
           protein C13G5.2 protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 177 YVLVSTGRSGLMLNPFFFLNKVLLG-PRW 94
           YV+ + GRS  +LN F   NK  LG PRW
Sbjct: 121 YVISTVGRSSNILNIFDKTNKSSLGNPRW 149


>Z46266-3|CAA86413.1|  156|Caenorhabditis elegans Hypothetical
           protein C07B5.6 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 64  TSDLCLS*TSPPWTQQDFIKKKKWIQH*TRPASTN*NVFNYPLHPSY 204
           TS   +S   P +T    + +   I      AS N N FNYP+   Y
Sbjct: 49  TSSSYISFGEPVFTTNILVNQPNCIDQSVMEASQNFNTFNYPVFKKY 95


>U80836-2|AAV58890.1|  454|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 2, isoform b protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 17  SHNCVLYNPIATRCYEQVICVCHEHRHLGPNRTLLRKKNGFNIRPDRPVLT-RTYLTTHY 193
           SH C +Y        E+ +        +      L+KK GF +RP   +L+ R +L +  
Sbjct: 197 SHTCAVYRQNLKILQEEKVLTADRIPQIRDVNKFLQKKTGFELRPCSGLLSARDFLASLA 256

Query: 194 IRLIR 208
            R+ +
Sbjct: 257 FRVFQ 261


>U80836-1|AAV58889.1|  393|Caenorhabditis elegans Abnormal
           catecholamine distributionprotein 2, isoform a protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 17  SHNCVLYNPIATRCYEQVICVCHEHRHLGPNRTLLRKKNGFNIRPDRPVLT-RTYLTTHY 193
           SH C +Y        E+ +        +      L+KK GF +RP   +L+ R +L +  
Sbjct: 267 SHTCAVYRQNLKILQEEKVLTADRIPQIRDVNKFLQKKTGFELRPCSGLLSARDFLASLA 326

Query: 194 IRLIR 208
            R+ +
Sbjct: 327 FRVFQ 331


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
            protein F40E12.2 protein.
          Length = 1251

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 94   PPWTQQDFIKKKKWIQ 141
            P WT   F KKKKW Q
Sbjct: 1093 PYWTLSSFYKKKKWEQ 1108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,524,344
Number of Sequences: 27780
Number of extensions: 220458
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)