Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N10
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    27   0.074
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   2.8  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   2.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 0.074
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 20  HNCVLYNPIATRCYEQVICVCHEHRHLGPNRTLLRKKNGFNIRPDRPVLT-RTYLTTHYI 196
           H C  Y     +  E+ I   H    L      L+K  GF +RP   +LT R +L++   
Sbjct: 254 HACAEYRRNFKKMQEEKIFEPHRIPQLQEVSEFLKKNTGFTLRPAAGLLTSRDFLSSLAF 313

Query: 197 RLIR 208
           R+ +
Sbjct: 314 RVFQ 317


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 57  VTNK*SVFVMNIATLDPTGLY 119
           + NK  ++V+  A  DPTG Y
Sbjct: 94  IDNKPEIWVLLEAKYDPTGAY 114


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 57  VTNK*SVFVMNIATLDPTGLY 119
           + NK  ++V+  A  DPTG Y
Sbjct: 94  IDNKPEIWVLLEAKYDPTGAY 114


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 240 PLDLILCPFYL 208
           P+D+ +CP Y+
Sbjct: 124 PMDIQICPIYI 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,455
Number of Sequences: 438
Number of extensions: 2848
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)