Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N08
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 206 1e-54
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 206 2e-54
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 29 0.58
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.3
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 27 2.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 26 4.1
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 25 5.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 7.2
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.2
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 9.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.5
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 206 bits (504), Expect = 1e-54
Identities = 101/157 (64%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 209 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 388
TG VYNVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 389 AAGKVVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 496
A GK V L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 206 bits (503), Expect = 2e-54
Identities = 101/157 (64%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 209 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 388
TG VYNVT ++GV++ K V R + KR+N+RIEHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 389 AAGKVVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYE 496
A GK V L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 141 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF*PCFKASC 1
S L+ F+ + IVPC+ + + ++P R EF+ F P + C
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF-PTSQQEC 788
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 241 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 378
+R+ R + R+ PT + P + + V LPQ+ ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 83 IFGRTSPWYHDDNPWSLSY 27
I G+ S WYHDD W++ Y
Sbjct: 200 IGGKKSSWYHDD-IWNMKY 217
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 379 LQQPFVLLDALEEVLPALGVLHVL 308
L+ PF+LL + E+LP + VL
Sbjct: 1708 LENPFILLSEVSEILPETPIQEVL 1731
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 278 ILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 400
IL K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 172 TKGYATQSIPR*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQA 351
TK +SIP + Q R S ++ + +Q + HQ P ++++Q P+A
Sbjct: 768 TKHLRKESIPSKQPSGGQQLRQESLPSQQSSESKQ--STQHQQPVEVQKSIQSDVSAPKA 825
Query: 352 RQGERKAV 375
++ K V
Sbjct: 826 KEVSEKPV 833
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 380 EAKAAGKVVNLKRQPAPPKAAH 445
+ KA K+ + +QP+PP A H
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEH 365
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/65 (21%), Positives = 26/65 (40%)
Frame = -1
Query: 249 TPRACAVTL*TRPVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLRAN 70
TP C + R + W+ FC + S + + +Y S ++ ++ +
Sbjct: 210 TPEFCQIC--EREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKD 267
Query: 69 KSLVP 55
SLVP
Sbjct: 268 SSLVP 272
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 347 KRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEKP 469
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.5
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +2
Query: 128 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 280
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 281 LPKRINIR----IEHVKHSKCR-QDFLKRVKEN 364
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,634
Number of Sequences: 5004
Number of extensions: 44812
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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