Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N08
(540 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 206 6e-54
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 32 0.23
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 31 0.53
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 30 1.2
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 30 1.2
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical ... 28 4.9
Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical pr... 27 6.5
U64598-3|AAK39213.1| 432|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF016452-18|AAB66009.1| 405|Caenorhabditis elegans Hypothetical... 27 6.5
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 8.6
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 206 bits (504), Expect = 6e-54
Identities = 103/161 (63%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
Frame = +2
Query: 29 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 208
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 209 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 388
TGR++NVT A+G+IVNKRVRG ILPKRINIRIEH+K SKCR DFL RVK N+ K AK
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 389 AAGK-VVNLKRQPAPPKAAHIVSGA-EKPVLLAPIPYEFVA 505
+AG+ V LKR P P+ AH V+ +P LLAP+ +E VA
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 213 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 76
PV P Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 213 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 76
PV P Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 213 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 76
PV P Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 31.1 bits (67), Expect = 0.53
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 407 NLKRQPAPPKAAHIVSGAE 463
NL+R+PAPPK H+ S AE
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 281 LPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGA 460
LP RI V+ + ++ +R KE+E + +++ + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 461 EKPVLLAPIPYE 496
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 281 LPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGA 460
LP RI V+ + ++ +R KE+E + +++ + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 461 EKPVLLAPIPYE 496
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 229 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 378
DR+ RR R++ PR+ P E P R R A + P+ ++G R++ E
Sbjct: 300 DRSEQRRHRDEPPPRRAPQE---QPSRRRGASPPEP--PRRQEGARRSEE 344
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 229 DRTRSRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 378
DR+ RR R++ PR+ P E P R R A + P+ ++G R++ E
Sbjct: 408 DRSEQRRHRDEPPPRRAPQE---QPSRRRGASPPEP--PRRQEGARRSEE 452
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 235 CGHIVNTPCLTVVYFVWHT 179
CG +++TPCL VV+ H+
Sbjct: 320 CGALISTPCLVVVFVFGHS 338
>AF038619-6|AAB92077.2| 442|Caenorhabditis elegans Hypothetical
protein F56A11.6 protein.
Length = 442
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 202 R*DRACLQCDRTRSRRDREQARPRQDPTETHQHPHRAR 315
R DR+ + DR +SR DRE+ R RQD ++T R R
Sbjct: 400 RDDRSEERKDR-KSRDDRERPRSRQDKSKTRSVEDRPR 436
>Z68005-4|CAA91992.2| 430|Caenorhabditis elegans Hypothetical
protein F59F3.2 protein.
Length = 430
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = -3
Query: 211 CLTVVYFVWHTLLYSAIAPNVNDVSHFVHFHVRG 110
C+++ + T +Y I +N +SH ++ H +G
Sbjct: 21 CISIFLIIASTTMYIFIGLKINHISHRLYNHAKG 54
>U64598-3|AAK39213.1| 432|Caenorhabditis elegans Hypothetical
protein C52B9.3a protein.
Length = 432
Score = 27.5 bits (58), Expect = 6.5
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Frame = -3
Query: 370 PFVLLDALEEVLPALGVLHVLDADVDAFR*DPAADALVHDHAESV----CGHIVNTPCLT 203
PF L + VLP + LH+ D + F D D + +V CG + + +
Sbjct: 132 PFKTLQSFLSVLPKVTELHMSD---NQFNDDDDCDEPISTTVRTVHLNRCGFLKWSSVMN 188
Query: 202 VVYFVWHTLLYSAIAPNVNDVSHFVHFHVRGKWNSSMCAESS 77
VV + + DV+H HF WN A++S
Sbjct: 189 VVKRFPNVCSVFVCENPLKDVTHCKHFEQLPFWNFLNLAKTS 230
>AF016452-18|AAB66009.1| 405|Caenorhabditis elegans Hypothetical
protein T05H4.2 protein.
Length = 405
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -3
Query: 415 LQVNYFAGGFS-FLQQPFVLLDALEEVLPALGVLHVLDADVDAF 287
L ++YFA + +++ FV DA+ +VL ++G+L +D F
Sbjct: 206 LDMDYFAIIMTEIMEEEFVSFDAINDVLKSIGILSAKSVLLDWF 249
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 305 IEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVN--LKRQPAPPKAAHIVSGAEKPVLL 478
+E+V + K+N++ K++++ KV ++ PAPP+ +V EKPV
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESE-KVTEQPVESAPAPPQVEQVVEKVEKPV-- 417
Query: 479 API 487
AP+
Sbjct: 418 APV 420
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 368 RLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEK 466
RL ++ AA + R P P K AH+ +G +K
Sbjct: 603 RLSQKRSAAALIDEQSRSPPPAKRAHLSNGFDK 635
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 368 RLLKEAKAAGKVVNLKRQPAPPKAAHIVSGAEK 466
RL ++ AA + R P P K AH+ +G +K
Sbjct: 1666 RLSQKRSAAALIDEQSRSPPPAKRAHLSNGFDK 1698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,775
Number of Sequences: 27780
Number of extensions: 263659
Number of successful extensions: 1030
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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