Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N07
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 140 2e-34
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 29 0.57
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 29 0.57
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 29 0.57
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 29 0.57
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 29 0.57
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 29 0.57
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 28 1.3
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 27 3.0
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 27 3.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 4.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 5.3
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 25 7.0
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 9.3
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 140 bits (338), Expect = 2e-34
Identities = 74/183 (40%), Positives = 98/183 (53%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
+FFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +Y
Sbjct: 134 SFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIY-- 191
Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
+ L+ + + A+SL YPT+ S HS+ N +KNL+A++
Sbjct: 192 DQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSL 251
Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFG 547
TE F+ K ++ DPS FV ESD+DMGFG
Sbjct: 252 ATEYTFEGTEQTKAFLADPSAFV--VAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFG 309
Query: 548 LFD 556
LFD
Sbjct: 310 LFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESD+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESD+DMGFGLFD
Sbjct: 98 ESDEDMGFGLFD 109
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESD+DMGFGLFD
Sbjct: 99 ESDEDMGFGLFD 110
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 148 LFVWSCCQTGVPTSGTIFAPAILDIKP 228
+ VW+ CQ S T++ PAILD+ P
Sbjct: 135 VLVWTVCQC---VSSTVYYPAILDLLP 158
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/87 (24%), Positives = 31/87 (35%)
Frame = -1
Query: 351 RFLKPFAME*GADATVGYPMDNESAATLATPARNFVAKGSLRLDVENCRREDGTGGRYTC 172
R P A GAD + G+ D++ A + + G + CR D
Sbjct: 42 RHALPVAAATGADVSRGFKSDSKQMAMEPSLDEIHLKAGVVNTGSRTCRHADAVKAAAEA 101
Query: 171 LTTRPYEKGEMFNMLRRVASEAPTLSP 91
TT P K M + AS+ + P
Sbjct: 102 ATTTPVTK--KHQMPKHYASDLNGVGP 126
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 177 TCLTTRPYEKGEMFNMLRRVASEAP 103
+ LT PYEKGE N +R S P
Sbjct: 279 SALTRLPYEKGEFINFVRYHPSITP 303
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 245 TKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 364
T +L GV +A + PT S PH + GF + IA
Sbjct: 522 TVYLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 366 AAMASRFLKPFAME*GADA-TVGYPMDNESAATLATPARNFVAKGSLRLDVENCRRED 196
A +A+R+ F + A T+ Y N+ ATL ++ V SLR+ + +C D
Sbjct: 429 ANLATRYRASFMLTDYAGLKTIAYNYQNDPKATLGFSKKHSVDLSSLRMCMVDCLNVD 486
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 285 ESAATLATPARNFVAKGSLRL 223
ES AT R+F AKG LRL
Sbjct: 306 ESVTKFATDLRSFSAKGQLRL 326
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 181 VHLFDNKTIRKGRDVQHVEK 122
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,199
Number of Sequences: 5004
Number of extensions: 40281
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -