Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N07
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 160 7e-40
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 157 7e-39
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 157 9e-39
11_06_0596 + 25385744-25388890 32 0.45
03_02_0966 + 12783515-12783901 30 1.4
06_03_1201 + 28359286-28359452,28360018-28360075,28361060-283611... 29 2.4
03_02_0935 - 12517564-12517650,12517995-12518060,12518156-125181... 29 2.4
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604... 29 3.1
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834... 29 4.1
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89... 28 5.5
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 28 5.5
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 28 5.5
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 28 5.5
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 28 7.2
08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991 27 9.6
04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890... 27 9.6
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 160 bits (389), Expect = 7e-40
Identities = 82/183 (44%), Positives = 104/183 (56%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
+FFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 139 SFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDS 198
Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
D KF +GV+ VA++SL+I YPT+A+APH NG+KN+LA+A
Sbjct: 199 G--SVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256
Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFG 547
TE + A IKEY+KDPSKF ESD D+G
Sbjct: 257 ETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMS 316
Query: 548 LFD 556
LFD
Sbjct: 317 LFD 319
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 157 bits (381), Expect = 7e-39
Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
+FFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 139 SFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDS 198
Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
+ KF +GV+ VA++SL+I YPT+A+APH NG+KN+LA+A
Sbjct: 199 G--SVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256
Query: 368 VTEVDFKEATTIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGF 544
TE + A IKEY+KDPSKF V ESD D+G
Sbjct: 257 ETEYSYPHADKIKEYLKDPSKFAVAAAVAAADSGAAAPAASKEEEKKEEPEEESDGDLGM 316
Query: 545 GLFD 556
LFD
Sbjct: 317 SLFD 320
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 157 bits (380), Expect = 9e-39
Identities = 82/184 (44%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
+FFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VY
Sbjct: 139 SFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDS 198
Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
+ KF +GV+ VA++SL+I YPT+A+APH NG+KN+LA+A
Sbjct: 199 G--SVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAV 256
Query: 368 VTEVDFKEATTIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGF 544
TE + A IKEY+KDPSKF V ESD D+G
Sbjct: 257 ETEYSYPHADKIKEYLKDPSKFAVAAPVAAADSGAAAVASSKEEEKKEEPEEESDGDLGM 316
Query: 545 GLFD 556
LFD
Sbjct: 317 SLFD 320
>11_06_0596 + 25385744-25388890
Length = 1048
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 168 SNRCTDLRYHLRAGNSRHQAGATLSRRSSLLEWPTWPRSRCPSGTRRSRLR 320
SN C + R+G R + RR++ L W W R R + R+ ++R
Sbjct: 73 SNNCVERYARTRSGRRRRRGFLGSLRRAARLPWAMWVRRRVATRIRQLKVR 123
>03_02_0966 + 12783515-12783901
Length = 128
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 257 AGVANVAALSLSIGYPTVASAPHSIANGFKN-LLAIAA 367
AG+A VAA++ ++ P VA A +++ KN LL+IA+
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104
>06_03_1201 +
28359286-28359452,28360018-28360075,28361060-28361152,
28362100-28362421,28362698-28362982,28363431-28363459
Length = 317
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 139 HLSLFVWSCCQTGVPTSGTIFAPAI 213
HL+L V S C+ PTSG I P +
Sbjct: 216 HLALNVMSACENKTPTSGKILFPVV 240
>03_02_0935 -
12517564-12517650,12517995-12518060,12518156-12518185,
12518279-12518377,12518578-12518673,12519221-12519271,
12519358-12519424,12519516-12519610,12519928-12520009,
12520609-12520658,12520741-12520791,12521749-12521832,
12521918-12522028,12522276-12522425,12522858-12522975,
12523118-12523290
Length = 469
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 2 HEAFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATL 124
H+AF ++ IS ++I ND+ +L G + G E L
Sbjct: 276 HDAFVESSGAVNTISASLMKIANDIRLLGSGPRCGLGELIL 316
>04_03_0199 -
12559351-12559433,12559693-12559827,12560260-12560437,
12560848-12561389,12561398-12564827
Length = 1455
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 204 REDGTGGRYTCLTTRPYEKGEMFNMLRRVASE 109
R DGT + ++T P+ +GE+ NM++ + +
Sbjct: 2 RMDGTSTLHEAVSTHPWNRGELSNMIQHMTHQ 33
>03_05_0947 -
29081007-29081047,29081670-29081958,29083044-29083424,
29083935-29084129
Length = 301
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 563 RVHRNRHVVASTPPGRTNPYGGRCDL 640
R R+ VV PP RT P GG C L
Sbjct: 18 RPRRSAAVVCERPPHRTGPAGGSCFL 43
>08_01_0113 +
897970-898038,898148-898271,898811-898896,898996-899049
Length = 110
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGF LFD
Sbjct: 99 ESDDDMGFSLFD 110
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGF LFD
Sbjct: 102 ESDDDMGFSLFD 113
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGF LFD
Sbjct: 295 ESDDDMGFSLFD 306
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGF LFD
Sbjct: 103 ESDDDMGFSLFD 114
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 267 PTWPRSRCPSGTRRSRL 317
PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165
>08_01_0218 + 1743566-1745537,1746834-1747696,1748329-1748991
Length = 1165
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 106 SF*SYSSQHVEHLSLFVWSCCQTGVPTS 189
SF ++ + EHL FVW+ Q+G P +
Sbjct: 781 SFAAHRALEAEHLCQFVWAKAQSGKPVN 808
>04_04_0969 -
29787617-29787919,29788019-29788180,29788962-29789093,
29789708-29789760,29790518-29791007
Length = 379
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 184 TSGTIFAPAILDIKPERPFRDEVPCWSGQRGRALVVHRVPDGRVCASFHRE 336
+SGT F P I+ +KP ++ +S Q R + +G +C + R+
Sbjct: 165 SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISA-NGALCTATLRQ 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,591,578
Number of Sequences: 37544
Number of extensions: 315832
Number of successful extensions: 919
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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