Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N07
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   221   9e-58
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   221   9e-58
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   221   9e-58
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   221   9e-58
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    32   0.76 
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    29   4.1  
S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    29   4.1  
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    29   4.1  
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    29   4.1  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  221 bits (539), Expect = 9e-58
 Identities = 119/184 (64%), Positives = 127/184 (69%), Gaps = 1/184 (0%)
 Frame = +2

Query: 8   AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
           +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY  
Sbjct: 136 SFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDS 195

Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
                          +    KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLAIAA
Sbjct: 196 G--SIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGF 544
            TEV+FKEATTIKEYIKDPSKF                            S E DDDMGF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGF 313

Query: 545 GLFD 556
           GLFD
Sbjct: 314 GLFD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  221 bits (539), Expect = 9e-58
 Identities = 119/184 (64%), Positives = 127/184 (69%), Gaps = 1/184 (0%)
 Frame = +2

Query: 8   AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
           +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY  
Sbjct: 136 SFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDS 195

Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
                          +    KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLAIAA
Sbjct: 196 G--SIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGF 544
            TEV+FKEATTIKEYIKDPSKF                            S E DDDMGF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGF 313

Query: 545 GLFD 556
           GLFD
Sbjct: 314 GLFD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  221 bits (539), Expect = 9e-58
 Identities = 119/184 (64%), Positives = 127/184 (69%), Gaps = 1/184 (0%)
 Frame = +2

Query: 8   AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
           +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY  
Sbjct: 136 SFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDS 195

Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
                          +    KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLAIAA
Sbjct: 196 G--SIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGF 544
            TEV+FKEATTIKEYIKDPSKF                            S E DDDMGF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGF 313

Query: 545 GLFD 556
           GLFD
Sbjct: 314 GLFD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  221 bits (539), Expect = 9e-58
 Identities = 119/184 (64%), Positives = 127/184 (69%), Gaps = 1/184 (0%)
 Frame = +2

Query: 8   AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
           +FFQALSIPTKISKGTIEIINDV ILKPGDKVGASEATLLNMLNISPFSYGL+V QVY  
Sbjct: 136 SFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDS 195

Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
                          +    KF  GVAN+AA+ LS+GYPT+ASAPHSIANGFKNLLAIAA
Sbjct: 196 G--SIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAA 253

Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXS-ESDDDMGF 544
            TEV+FKEATTIKEYIKDPSKF                            S E DDDMGF
Sbjct: 254 TTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGF 313

Query: 545 GLFD 556
           GLFD
Sbjct: 314 GLFD 317


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 201 EDGTGGRYTCLTTRPYEKGEMFNMLRRVASEAPTLSPGFRIWTSLIISIVPF 46
           +D T   Y+C T   Y    M + LR +  E P++ PG  + TSL  S   F
Sbjct: 818 DDETSSAYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 521 ESDDDMGFGLFD 556
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 521 ESDDDMGFGLFD 556
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 521 ESDDDMGFGLFD 556
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 521 ESDDDMGFGLFD 556
           +SDDDMGFGLFD
Sbjct: 101 QSDDDMGFGLFD 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,579,422
Number of Sequences: 53049
Number of extensions: 494547
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)