Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N07
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 189 2e-48
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 31 0.93
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 31 0.93
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 31 0.93
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 31 0.93
Z74031-8|CAA98451.1| 372|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 28 4.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 28 4.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 28 4.9
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 189 bits (460), Expect = 2e-48
Identities = 95/183 (51%), Positives = 119/183 (65%)
Frame = +2
Query: 8 AFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYRP 187
+FFQAL IPTKI++GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVY
Sbjct: 136 SFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDD 195
Query: 188 PVPXXXXXXXXXXXXDPFATKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAA 367
+ +FL+GV NVA++SL++ YPT+AS HS+ANG +N+L +AA
Sbjct: 196 --GTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAA 253
Query: 368 VTEVDFKEATTIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFG 547
VT+V FKEA TIK +I DPSKF ESDDDMGFG
Sbjct: 254 VTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFG 309
Query: 548 LFD 556
LFD
Sbjct: 310 LFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGFGLFD
Sbjct: 96 ESDDDMGFGLFD 107
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGFGLFD
Sbjct: 99 ESDDDMGFGLFD 110
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +2
Query: 521 ESDDDMGFGLFD 556
ESDDDMGFGLFD
Sbjct: 100 ESDDDMGFGLFD 111
>Z74031-8|CAA98451.1| 372|Caenorhabditis elegans Hypothetical
protein F32D8.8 protein.
Length = 372
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 159 VLLSNRCTDLRYHLR--AGNSRHQAGATLSRRSSLLEW 266
V +N+C+DL+Y+ + NSR Q A S L+ W
Sbjct: 133 VTSTNKCSDLKYYFQNYRNNSRRQKPAKWDILSELMTW 170
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 599 VLMRPHVYYDAHVLSQRDQSPCRRHS 522
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 599 VLMRPHVYYDAHVLSQRDQSPCRRHS 522
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 599 VLMRPHVYYDAHVLSQRDQSPCRRHS 522
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 599 VLMRPHVYYDAHVLSQRDQSPCRRHS 522
V++ P YY+ VL QR PC HS
Sbjct: 986 VVVLPAEYYEGTVLRQRAPQPCLSHS 1011
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,168,977
Number of Sequences: 27780
Number of extensions: 239304
Number of successful extensions: 750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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