Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N07
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.15 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.82 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.82 

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 283 LVVHRVPDGRVCASFHRERFQEPARHRC 366
           L +H +P+ +V   F  +R +E A  RC
Sbjct: 396 LTIHTIPEVKVTPRFQAKRLKEEANIRC 423


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 196 WYRRSVHLFDNKTIRKG 146
           W+R+ + L DN ++R+G
Sbjct: 26  WFRKGLRLHDNPSLREG 42


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 7   GFLPGSFHPH 36
           GFLP S+HPH
Sbjct: 310 GFLPPSYHPH 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,070
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)