Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N06
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    27   2.3  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   4.1  
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    26   4.1  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   5.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.4  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   5.4  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   7.2  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    25   9.5  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    25   9.5  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   9.5  

>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 321 THGLLCGISYRRNLLYVCDRYLDLYGFSAFEIPNRTIE 434
           THGL C + Y +N  Y+     D   F+AFE  +R  +
Sbjct: 102 THGLFCVVFYHQNKSYLKMGVTD--NFNAFEEDSRVYQ 137


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 496 IYNHKRGHIQSKFRFGT 446
           IY+H  GH+ SKF F T
Sbjct: 600 IYDHLLGHVDSKFIFKT 616


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 154 KRENLKLWKNCIYNVSISYIK*KQHMFGFY 65
           K+E  +LWKN +    ++++K    +F +Y
Sbjct: 768 KKEIAELWKNKVLGTDLTWMKTVSEIFEYY 797


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -2

Query: 117 IMFQFHILNENNICLVFTSIGAPNNSYVPLIIY 19
           +   FH+LN+++ C   T + +    Y    IY
Sbjct: 451 LAIHFHLLNDHDKCFWHTGMASSYEDYTATFIY 483


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 266 FTSRITHSFLTINPPSRDYISIGIILTT 183
           +++RIT+S  ++N  +  Y+S+G I  T
Sbjct: 176 YSNRITNSNTSVNDITSKYLSVGTITLT 203


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +3

Query: 207 YVITRGRVNC*ERMRDATRKESMREMHSNDIFFRARFRTHGLL 335
           Y++ +GRV      +D+ R E ++E+    I+   R  ++ ++
Sbjct: 137 YIVPQGRVTSLTNAKDSERLELLKEVAGTQIYENRRAESNKIM 179


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 132 GKIAFIMFQFHILNENNICLVF 67
           GK   I ++ H +++N++C+VF
Sbjct: 217 GKQHIIHYERHFMHKNHLCMVF 238


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 388 ICMDLVRSKSLIGLSNFESKFRNGISTVCG 477
           IC ++ +S S I +  F     NG+  VCG
Sbjct: 397 ICSNMDKSISEIEMEIFVELVNNGVKPVCG 426


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 379 LSQTYSKFLRYEIPHSSPCVRNLARKKMSFECI 281
           + + YSK L +  PH       + R  M F C+
Sbjct: 299 IEENYSKRLEFNFPHKRAAFMEITR-NMFFSCL 330


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 336 CGISYRRNLLYVCDRY 383
           CG+   R L ++CDRY
Sbjct: 536 CGLGLERFLAWLCDRY 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,910
Number of Sequences: 5004
Number of extensions: 49373
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)