Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N06
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1251 + 25186333-25188027,25188113-25188208,25188292-251883...    29   1.8  
04_04_0340 + 24517562-24520318                                         28   5.5  
06_02_0133 + 12176059-12176238,12177244-12177362,12177515-121776...    27   9.6  

>07_03_1251 +
           25186333-25188027,25188113-25188208,25188292-25188381,
           25188473-25188577,25188764-25188823,25188931-25188993,
           25189077-25189172,25189982-25190146,25191104-25191277,
           25191387-25191452,25191556-25191654,25192714-25192857,
           25193312-25193401
          Length = 980

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 445 LIRSSIVRLGISN--ALNPYKSRYLSQTYSKFLRYEIPHSSP 326
           L+RSS++ L +S+  A  P+    L+Q  +  +R+E PH  P
Sbjct: 86  LLRSSLLSLAVSSNAASPPFLRNKLAQLLALLVRFEYPHVYP 127


>04_04_0340 + 24517562-24520318
          Length = 918

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 370 TYSKFLRYEIPHSSPCVRNLARKKMSFECISLID 269
           T+     +  PH+ PCV  L  +K+   C  L++
Sbjct: 791 THGSSPSHAAPHAMPCVLPLGLEKLELRCFPLVE 824


>06_02_0133 +
           12176059-12176238,12177244-12177362,12177515-12177612,
           12177811-12177870,12177920-12177990,12178082-12178276,
           12178395-12178441,12178532-12178598,12178660-12178665,
           12178689-12178789,12179014-12179115,12179182-12179323,
           12179578-12179661,12179760-12180080
          Length = 530

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 482 ERP-HTVEIPFRNFDSKFDSPI 420
           ERP HTV I +R FD +F  PI
Sbjct: 496 ERPVHTVHIYWRKFDDRFMRPI 517


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,419,482
Number of Sequences: 37544
Number of extensions: 259713
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)