Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N06
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical...    29   2.1  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF047659-11|AAC04428.1|  182|Caenorhabditis elegans Hypothetical
           protein K07H8.3 protein.
          Length = 182

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -1

Query: 442 IRSSIVRLGISNALNPYKSRYLSQTY-SKFLRYEIPHSSPCVRNLARKKMSFECI 281
           ++ S  RLG++N +    +R + +TY +K++   +  S+    NL +  + FE +
Sbjct: 77  VKRSYRRLGLANKMMDQTARAMVETYNAKYVSLHVRVSNRAALNLYKNTLKFEIV 131


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 397 DLVRSKSLIGLSNFESKFRNGISTVCGL 480
           D+++ K    L+ F S+   G+STVC L
Sbjct: 126 DMIKKKLETQLTQFRSELTQGLSTVCEL 153


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 397 DLVRSKSLIGLSNFESKFRNGISTVCGL 480
           D+++ K    L+ F S+   G+STVC L
Sbjct: 148 DMIKKKLETQLTQFRSELTQGLSTVCEL 175


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 397 DLVRSKSLIGLSNFESKFRNGISTVCGL 480
           D+++ K    L+ F S+   G+STVC L
Sbjct: 150 DMIKKKLETQLTQFRSELTQGLSTVCEL 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,845
Number of Sequences: 27780
Number of extensions: 263982
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)