Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N06
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.1  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 454 NGISTVCGLSYGYICAXAYSRNSN 525
           NGI  V    Y Y  + A+  N+N
Sbjct: 259 NGIGAVIEFKYSYEISNAFRGNNN 282


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 381 TYHKRTVNFSDTKYRIAARACGTSHGKK 298
           T  KR+   S  +Y+I  R+ G+ HG++
Sbjct: 360 TPSKRSDYDSRPQYQIDKRSMGSHHGQR 387


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/51 (19%), Positives = 20/51 (39%)
 Frame = -3

Query: 326  VRAEPRTEKNVIRMHLSHRFFTSRITHSFLTINPPSRDYISIGIILTTKKT 174
            ++   RT+      ++ + F    +TH  +   PP    I++    T   T
Sbjct: 1333 IKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPPHSPQITLTATTTNSLT 1383


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 146 FSFEVPMAA*FFLLSKLYQCLCNHER 223
           FS+ +PM    +  S++   + NHE+
Sbjct: 218 FSYCIPMILIIYYYSQIVSHVVNHEK 243


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 257 RITHSFLTINPPSRDY 210
           RITHS+   +P + DY
Sbjct: 229 RITHSYFMPDPLAGDY 244


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = +3

Query: 207 YVITRGRVNC*ERMRDATRKESMREMHSNDIF 302
           ++I+RG+V    +  D   ++ +R +   D F
Sbjct: 258 FIISRGQVRVTIKQPDTPEEKYIRTLSKGDFF 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,139
Number of Sequences: 438
Number of extensions: 3293
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)