Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N05
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.70 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.70
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 441 IVTPRV*KYYWLFLIYTGTLSICYPNIALNMH 346
           +V P + K+  LF +   T SIC   + LN+H
Sbjct: 298 LVVPLLGKFV-LFTMILDTFSICVTVVVLNVH 328


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 441 IVTPRV*KYYWLFLIYTGTLSICYPNIALNMH 346
           +V P + KY  +F +   ++SIC   + LN+H
Sbjct: 302 LVVPLLGKYL-IFAMILVSISICVTVVVLNVH 332


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 441 IVTPRV*KYYWLFLIYTGTLSICYPNIALNMH 346
           +V P + KY  +F +   ++SIC   + LN+H
Sbjct: 302 LVVPLLGKYL-IFAMILVSISICVTVVVLNVH 332


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 327 NLNNAICHISNYIILILENKNVNNDKI 247
           N  +++C +   +  + + KN  N+KI
Sbjct: 127 NTGSSLCDLVQGLERLFDEKNAGNNKI 153


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 425 TRGVTIRPCCTMK 463
           T GVT+ P CT K
Sbjct: 306 TPGVTMIPACTCK 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,656
Number of Sequences: 438
Number of extensions: 1669
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)