Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N04
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    28   1.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.5  

>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 232 INISCSPRFYPRNSRSREISGMKTIPCHSLDLKLSPHHISS 354
           +N   SP+ YP N++ + +S  K     +L+L +SP  +SS
Sbjct: 553 LNDDASPK-YPMNAQGKPLSRRKARQLTALELGVSPEALSS 592


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 79  YNLLFINSKNIPEIIFGTNRKQILLINS 162
           Y  +F  S+N PE++ G   +++ ++N+
Sbjct: 129 YRAMFYQSRNNPEVVIGGYHQKLTVVNA 156


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 504 SDIRVSLSYYVFISTFFF 451
           S IR+SL +Y+FI+  FF
Sbjct: 789 SHIRISLFFYIFINVAFF 806


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,443
Number of Sequences: 5004
Number of extensions: 36064
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)