Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N04
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218     32   0.38 
07_03_0003 - 12238606-12239336,12239550-12239804,12239886-122399...    29   3.6  

>04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218
          Length = 384

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 398 FLYVMNKLKNYWTDLDEIWCGDSF 327
           F+ ++++ K+Y++DL++ WC D F
Sbjct: 103 FVSILSRAKDYFSDLEKNWCSDDF 126


>07_03_0003 -
           12238606-12239336,12239550-12239804,12239886-12239988,
           12240393-12240713,12241427-12241480,12242134-12242274
          Length = 534

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 214 LKRYGYINISCSPRFYPRNSRSREISGMKTIPCHSLDLKLSP 339
           + +YGY ++  +P  + R+ + R ++  KT+P   L + + P
Sbjct: 56  IAQYGYSSVHENPEAFFRSVKPRVVAPQKTLPIKKLAIPVPP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,696
Number of Sequences: 37544
Number of extensions: 195686
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)