Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N03
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   1.6  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   2.8  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   3.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   4.9  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    25   4.9  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   6.5  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 363 TGRQRGCTSSPSAKSPYACQL*SSKSIRLHQKTPXI 470
           TG+    T +P A  PY C L +    RL  +T  I
Sbjct: 10  TGKPSRSTKNPDAPRPYKCPLCTKAFYRLEHQTRHI 45


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 310 LEGAEPKLRVRWYKDSTLLGDSEDAHHHLPPRVR-MHANY 426
           +EG++ ++ +   +  TLLGD+  A H   PR + +H  +
Sbjct: 317 VEGSDERIVIATTRPETLLGDTAVAVHPQDPRYKHLHGKF 356


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 196 ELLVVILIKNIVKCEKP-FKSV--PVIVKAYENDTVLLPCYLEGAEPKLRVRWYKDST 360
           EL++  +  N+++ + P   SV  PV+  A  N TVLLP YL   E  L ++ Y   T
Sbjct: 77  ELVIKYVPSNVLQAKFPQILSVLAPVVNNAETNKTVLLP-YLNVLEKLLLLQDYSSWT 133


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 433 EDYSWHAYGLLAEGDDVHPRCLPVTLNLC 347
           ED S +   L +  + V+P  LP+T N+C
Sbjct: 88  EDTSEYKSVLCSLDESVYPNLLPLTANIC 116


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 345 PTDTKFWLSSF*VARQQHCIIF 280
           PT  KFWL    V  Q HC ++
Sbjct: 281 PTPNKFWLECDKVTIQPHCGVY 302


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 29/98 (29%), Positives = 37/98 (37%)
 Frame = -3

Query: 386 CASSLSPSNVESLYQRTRSFGSAPSK*HGSNTVSFSYALTITGTLLKGFSHFTMFFINIT 207
           CA+S S  N E LY+  R+  S           S S+ +      LK  S    FF N  
Sbjct: 6   CATSTSLENNELLYKNIRNLFS----------TSRSFPIEQEWMNLKSISQMKDFFSNFP 55

Query: 206 TNSSLINFIFIIM*FYLLNYQI*IEKFFNLKKYNATNG 93
            NS   N        +L N  +  E F N K    +NG
Sbjct: 56  GNSKANN-------HFLCNSPLKFEIFNNEKSVKPSNG 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,655
Number of Sequences: 5004
Number of extensions: 39973
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)