Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N03
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0367 + 2797475-2798062                                           29   2.8  
06_03_0919 - 25939176-25940441                                         28   3.7  
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011...    27   6.5  
05_06_0280 - 26909144-26909320,26909892-26909978,26910750-269107...    27   8.6  

>11_01_0367 + 2797475-2798062
          Length = 195

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 300 AVLLRRS*AKTSCPLVQRFNVTGRQRGCTSSPSAKSPY-AC 419
           AVLLRR+ +  S PLV   +    +RG   +PS    Y AC
Sbjct: 6   AVLLRRAASLPSLPLVASLHAAALRRGAVLAPSLIHAYSAC 46


>06_03_0919 - 25939176-25940441
          Length = 421

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 328 KLRVRWYKDSTLLGDSEDAHHHLPPRVRMHANYSLQSRYACIR 456
           +LRV    D+  +  S+ A +HL PR R     +L +RY+C+R
Sbjct: 282 ELRVSCRCDTEPMATSDPAAYHLKPRFR-----ALFTRYSCVR 319


>04_03_0055 +
           10299539-10299703,10300042-10300746,10301025-10301116,
           10302896-10303313
          Length = 459

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 25/93 (26%), Positives = 43/93 (46%)
 Frame = +1

Query: 178 KMKLMRELLVVILIKNIVKCEKPFKSVPVIVKAYENDTVLLPCYLEGAEPKLRVRWYKDS 357
           +++L++  L +I  + +V C  PFKS+P  V     + V LP  +    P L+ +  +  
Sbjct: 104 EIQLIQNNLQIITYQALVPCF-PFKSLPSEVCTSVAENVFLPLIISWNSPLLK-QPIEYH 161

Query: 358 TLLGDSEDAHHHLPPRVRMHANYSLQSRYACIR 456
             LG     H  +P RV   A  S + +   +R
Sbjct: 162 WWLGFKPCLHVQIPRRVWYMAFGSSKDQVVFVR 194


>05_06_0280 -
           26909144-26909320,26909892-26909978,26910750-26910770,
           26911410-26911529
          Length = 134

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 265 IVKAYENDTVLLPCYLEGAEPKLRVRWYKDSTLLG 369
           ++K Y  D V  PC L G   + ++ WY D  + G
Sbjct: 55  LIKDY--DLVTKPCTLPGGLGRAQIDWYMDEEIKG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,502
Number of Sequences: 37544
Number of extensions: 225833
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)