Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N03
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.45 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.0  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   4.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 298 LPCYLEGAEPKLRVRWYKDSTLLGDSEDAH 387
           L C +   +  L + W KD   +G SE  H
Sbjct: 630 LTCSVTRGDLPLSISWLKDGRAMGPSERVH 659



 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 416  MPTIVFKVDTLASEDTXDYTCEV 484
            +P+    +  L S+D  DYTC+V
Sbjct: 1360 LPSGELMLSNLQSQDGGDYTCQV 1382


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 416  MPTIVFKVDTLASEDTXDYTCEV 484
            +P+    +  L S+D  DYTC+V
Sbjct: 1364 LPSGELMLSNLQSQDGGDYTCQV 1386



 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 428 VFKVDTLASEDTXDYTC 478
           +  +  LA+E + DYTC
Sbjct: 673 LLSITNLAAEHSGDYTC 689


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 52 YLIPREPVTTSARYRL 5
          YL+P++ V  S+ YR+
Sbjct: 43 YLLPKDVVVVSSNYRV 58


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 435 KSIRLHQKTPXIILARSFV 491
           KSIR   K P   +A+SFV
Sbjct: 224 KSIRAVTKLPDTSMAKSFV 242


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 183 HFYYYVILFIKLSNIDRKVL 124
           HF Y  ++FI  S+ D + L
Sbjct: 164 HFNYMKVIFIHSSDTDGRAL 183


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 422 LACIRTLGGR**CASSLSPSNVESLYQRTRS 330
           L  I   G R   A  + PS++ ++Y R R+
Sbjct: 196 LVAIGVAGFRVDAAKHMWPSDLRTIYSRVRN 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,450
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)