Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N02
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   0.85 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   6.0  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 228 GY*SDCKRWWTCCTGLCNQ 284
           G+ + C R+WTC  G   +
Sbjct: 107 GHETSCTRYWTCWNGTATE 125


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 104 PVCYRSCSFLTAENLY 57
           P C+R C   T E L+
Sbjct: 883 PTCWRECDKATCEKLF 898


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 232  YPHQRTFPCLAKG*VPVVCTEEV 164
            Y    T PCLA G  P V T ++
Sbjct: 1320 YKEDVTLPCLAVGLPPPVITWKI 1342


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 292 ISKALIAFYQKYVDEASKKEIKDI 363
           I K +IAFY K +   +  EIK I
Sbjct: 126 IVKPIIAFYYKPIKTLNGHEIKFI 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,764
Number of Sequences: 336
Number of extensions: 3458
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)