Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N02
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 181 6e-47
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 181 6e-47
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 47 2e-06
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 29 0.52
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 29 0.68
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 8.4
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 181 bits (441), Expect = 6e-47
Identities = 83/121 (68%), Positives = 102/121 (84%)
Frame = +1
Query: 106 KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIR 285
K G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GVDIRV V GGGHV+Q+YAIR
Sbjct: 20 KVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIR 79
Query: 286 QAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 465
QAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSY
Sbjct: 80 QAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSY 139
Query: 466 R 468
R
Sbjct: 140 R 140
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 48 IQAVQVFGRKKTATAVAYWK 107
+Q+VQ FG+K ATAVA+ K
Sbjct: 1 MQSVQCFGKKGNATAVAHCK 20
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 181 bits (441), Expect = 6e-47
Identities = 83/121 (68%), Positives = 102/121 (84%)
Frame = +1
Query: 106 KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIR 285
K G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+GVDIRV V GGGHV+Q+YAIR
Sbjct: 20 KVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIR 79
Query: 286 QAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 465
QAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GARAR QKSY
Sbjct: 80 QAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSY 139
Query: 466 R 468
R
Sbjct: 140 R 140
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 48 IQAVQVFGRKKTATAVAYWK 107
+Q+VQ FG+K ATAVA+ K
Sbjct: 1 MQSVQCFGKKGNATAVAHCK 20
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 46.8 bits (106), Expect = 2e-06
Identities = 38/114 (33%), Positives = 53/114 (46%)
Frame = +1
Query: 112 GHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQA 291
G G VNG P D+ R++ K L + + ++ TV GGG Q A+ A
Sbjct: 26 GTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAA 84
Query: 292 ISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARY 453
ISK+LI + E S K+ V D ++ D R+ E KK G P AR +Y
Sbjct: 85 ISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTGQPKARKKY 127
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 29.1 bits (62), Expect = 0.52
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 461 PTVNIISICIVWYRLDLFSLINAIPLG 541
P V+ +++C+ W ++ FSL+ P G
Sbjct: 434 PEVSAVTLCLFWNKMTRFSLVVGAPFG 460
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.68
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 39 REPIQAVQVFGRKKT--ATAVAYWKTRTWSVACKWTPPRPGRTQTSSVQTT 185
+ P QA V GR+ T T A WKT WS+ W P R SS T
Sbjct: 282 KRPPQATVVIGRQITRFGTLTARWKTGVWSLG-SWGIASP-RGANSSFSLT 330
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2
Query: 272 TCATCPPPFTVTLISTP 222
T +CPPP T+ +++ P
Sbjct: 184 TSTSCPPPTTILIVTVP 200
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.0 bits (52), Expect = 8.4
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Frame = +1
Query: 334 EASKKEIKDILVQY--DRSLLVADPRRCEPKKFGGPGARARYQKSYR*YHFNLHRLVSSR 507
E+ +I +L ++ D ++ D R K F G Y + +R L +
Sbjct: 117 ESFSNDILKVLSEWLTDLFTIIDDMRAQSRKSFKGSAELRNYTRCFRQIILLLTNMFRVG 176
Query: 508 FVFFNQCDTIGCI*KIINPKKSTTEE 585
F F++ + + + KSTT+E
Sbjct: 177 FNLFDEMEVSSMLANCVWVSKSTTDE 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,490
Number of Sequences: 5004
Number of extensions: 54368
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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