Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N02
(597 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 184 5e-47
11_01_0155 - 1287003-1287452 184 5e-47
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 32 0.40
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 30 1.6
11_01_0523 - 4109070-4109984,4110532-4110936 28 6.5
04_04_1154 - 31297628-31298020,31298150-31298300,31298389-312986... 28 6.5
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 28 6.5
02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022 28 6.5
01_03_0227 + 13967966-13968559 28 6.5
03_05_0077 - 20547070-20547108,20547407-20547697 27 8.6
>12_01_0152 - 1168928-1169377
Length = 149
Score = 184 bits (448), Expect = 5e-47
Identities = 80/121 (66%), Positives = 103/121 (85%)
Frame = +1
Query: 106 KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIR 285
K G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R+ V+GGG +Q+YAIR
Sbjct: 29 KPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIR 88
Query: 286 QAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 465
QAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSY
Sbjct: 89 QAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSY 148
Query: 466 R 468
R
Sbjct: 149 R 149
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3
Query: 39 REPIQAVQVFGRKKTATAVAYWK 107
R P VQ FGRKKTA AV+Y K
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCK 29
>11_01_0155 - 1287003-1287452
Length = 149
Score = 184 bits (448), Expect = 5e-47
Identities = 80/121 (66%), Positives = 103/121 (85%)
Frame = +1
Query: 106 KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIR 285
K G G+++VNG P++L+ P +L+ K EPILL G+ +F +D+R+ V+GGG +Q+YAIR
Sbjct: 29 KPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIR 88
Query: 286 QAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 465
QAI+KAL+A+YQKYVDEASKKE+KDI +YDR+LLVADPRRCEPKKFGG GARAR+QKSY
Sbjct: 89 QAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSY 148
Query: 466 R 468
R
Sbjct: 149 R 149
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3
Query: 39 REPIQAVQVFGRKKTATAVAYWK 107
R P VQ FGRKKTA AV+Y K
Sbjct: 7 RPPPGTVQCFGRKKTAVAVSYCK 29
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1
Query: 229 DIRVTVKGGGHVAQVYAIRQAISKAL 306
D+ TVKGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +3
Query: 264 CTGLCNQTSHL*SPYRFLPEICRRSI*EGDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRP 443
CTG+ Q S S Y F +I + + G+ + S K R +++R ++ + RRP
Sbjct: 725 CTGIQAQRSMKHSDYNFCNKIVQIPLSYGEDKPRSKRIYKHQNRNNNNIRTKKRYFLRRP 784
Query: 444 CQIP 455
++P
Sbjct: 785 VRLP 788
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 250 GGGHVAQVYAIRQAISKALIAFY 318
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>04_04_1154 -
31297628-31298020,31298150-31298300,31298389-31298620,
31298700-31298910,31299137-31299255,31299341-31299415,
31299991-31300189,31300258-31300664,31300775-31300839,
31300967-31301011,31301449-31301520,31301597-31301671,
31301912-31301983,31302178-31302249,31302525-31302596,
31302880-31302951,31303056-31303127,31304064-31304135,
31304375-31304561,31304686-31304815
Length = 930
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 133 NGRPLDLVEPRLLQYKLQEPILLL 204
NG PLD V+P+L ++ +E I ++
Sbjct: 807 NGHPLDFVDPKLSEFNSEEVIRVI 830
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 377 TEVCWSLTLVVASPRNSVVQAPVPDTRNPTVNIISICIVWYRLDLFSLINAIPLGVF 547
TE+ S L S + ++ P + C+ YR+DLFS+I+ + G F
Sbjct: 504 TEIMVSKNLQTCSDCHEWMKIVSKTDAAPVKTVGQYCLENYRIDLFSIISTVLTGGF 560
>02_02_0288 - 8603033-8603436,8603611-8603862,8604530-8605022
Length = 382
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 141 ASIYTQHSMSSFSSMLPQLQFSYGRKLVRLGLVHVLPHAR 22
A ++ QH S SS LP+L F++ R+ + L H+R
Sbjct: 97 AFVFVQHDSSPASSYLPRLHFAFLRQPRAAPAILPLRHSR 136
>01_03_0227 + 13967966-13968559
Length = 197
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 420 EIRWSRRPCQIPEILPLISF 479
E RW+RRP Q+P + +SF
Sbjct: 71 EQRWTRRPTQVPPPITAVSF 90
>03_05_0077 - 20547070-20547108,20547407-20547697
Length = 109
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 348 GDQRHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQ 449
GDQR S + +GR L E W+RR C+
Sbjct: 4 GDQRGDSPSSHELSGRLEGILADGEAPWARRACK 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,476
Number of Sequences: 37544
Number of extensions: 380682
Number of successful extensions: 1104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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