Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N02
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   193   9e-50
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.62 
U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical pr...    30   1.1  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    27   7.7  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  193 bits (470), Expect = 9e-50
 Identities = 84/121 (69%), Positives = 107/121 (88%)
 Frame = +1

Query: 106 KRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIR 285
           K+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  VDIR+ V GGGHVAQ+YA+R
Sbjct: 24  KKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVR 83

Query: 286 QAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY 465
           QA++KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKSY
Sbjct: 84  QALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSY 143

Query: 466 R 468
           R
Sbjct: 144 R 144



 Score = 34.7 bits (76), Expect = 0.051
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 48  IQAVQVFGRKKTATAVAYWK 107
           +Q+VQ FGRKKTATAVA+ K
Sbjct: 5   VQSVQTFGRKKTATAVAHCK 24


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 325 YVDEASKKEIKDILVQYDRSLLVADPRRCE 414
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>U41991-8|AAA83348.2|  500|Caenorhabditis elegans Hypothetical
           protein C42D4.2 protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 217 FSGVDIRVTVKG---GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSL 387
           F G + R T+ G   GG VA + +    ++  L + +Q+Y+  +S      + +Q +R+ 
Sbjct: 114 FGGNNKRTTLLGHSYGGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTY 172

Query: 388 LVADPRRCEPK 420
             A+   C PK
Sbjct: 173 RFAEHANCLPK 183


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 385 LLVADPRRCEPKKFGGPGARARY 453
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 357 RHSSSIRQKFAGR*PSSLRAQEIRWSRRPCQIPEILP 467
           +H+S +R++     P  L+   +R+  +P QIP + P
Sbjct: 203 KHNSPVRRQLVDPLPPLLQPSPVRFPAQPWQIPPLHP 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,163
Number of Sequences: 27780
Number of extensions: 318846
Number of successful extensions: 871
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)