Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N01
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    36   0.003
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    28   0.64 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.5  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   6.0  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    25   7.9  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 41  TVLPAQGEITQVLRITNPSRSPLRLRIRVS-YNVDGNPVLEQTEVNSFPPEL 193
           T +   GE +Q LR+  PS S ++LR+R+S     G+  L+Q +    P +L
Sbjct: 812 TSMEPGGETSQTLRVHGPSGSQVKLRLRISVVRQGGSNTLDQVDFGKLPSDL 863


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 222 ATASSDSPTRNDIYRTTSELYRINQSTRVLLSVPI*TIGTVFCTT 356
           ATASSDS  R D Y+ +S++  +    +   ++ +   GTV  TT
Sbjct: 325 ATASSDSIPRPDNYQNSSDVISVISFAKSSYTLRVSVNGTVLGTT 369


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 198  TDAWRIRPATASSDSPTRNDIYRTTSELYRINQSTRVLLSVPI*TIGTVFCTTVSE 365
            TD+ ++  + A    PTRN       EL ++ QS  V LS  I  I    C T ++
Sbjct: 955  TDSPKLTLSLAMQHPPTRNLYVSRLRELRKLCQSFLVALSKNIENIPYALCYTAAQ 1010


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 311 IICPYINDRNCVLYNCIRI 367
           +IC Y N+R  +L++C+ I
Sbjct: 106 VICDYGNNRRYILFSCVII 124


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 401 YRDRL*NTSKLIFGYSCTEHSSYRLYRD 318
           Y DR+ N  K +FG +   +SS  L  D
Sbjct: 263 YEDRIRNAGKFVFGENMDRNSSGLLLSD 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,345
Number of Sequences: 5004
Number of extensions: 39711
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)