Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N01
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337... 50 1e-06
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 43 1e-04
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382... 30 0.85
03_02_0519 + 9066918-9068261 29 1.5
01_07_0083 + 40970890-40971015,40971886-40971994,40972679-409727... 27 6.0
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 27 7.9
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 27 7.9
06_01_0855 + 6493239-6494420 27 7.9
>06_01_0475 +
3375757-3375800,3375898-3376168,3376252-3376440,
3376816-3376989,3378039-3378218,3378565-3378719,
3379509-3379599,3380023-3380186,3380791-3380845,
3380944-3381066,3381160-3381255,3381706-3381833,
3382407-3382466,3382607-3382896,3383127-3383237,
3383318-3383395,3383487-3383659,3384192-3384296,
3385017-3385112
Length = 860
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Frame = +2
Query: 11 LQLDMMSPSGTVLPAQGE--ITQVLRITNPS--RSPLRLRIRVSYNVDGNPVLEQTEVNS 178
+QL + S LPA G +TQ L +TN + PL +RIR++Y V+G LEQ ++N+
Sbjct: 796 IQLRLDPASSNTLPASGNDSVTQSLSVTNNQHGQKPLAMRIRITYKVNGEDRLEQGQINN 855
Query: 179 FPPEL 193
FP L
Sbjct: 856 FPAGL 860
>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 42.7 bits (96), Expect = 1e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = +2
Query: 11 LQLDMMSPSGTVLPAQGE--ITQVLRITNPS--RSPLRLRIRVSYNVDGNPVLEQTEVN 175
+QL + SG ++PA G +TQ +TN + PL +RIR+SY V+G LEQ + N
Sbjct: 857 IQLRLDPASGNIVPASGNGSVTQGFSVTNNQHGQKPLAMRIRMSYKVNGEDRLEQGQEN 915
>07_03_1737 +
29137654-29137842,29137999-29138061,29138196-29138267,
29138411-29138518,29138615-29138695,29138818-29138871,
29138956-29139081,29139162-29139251,29139444-29139566,
29139667-29139777,29139927-29140040,29140214-29140270,
29140350-29140424,29140526-29140600
Length = 445
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 211 RHASVEQLRREAVHLRLLQHGVTVHV 134
+H VEQ+RRE ++L+QH VH+
Sbjct: 57 KHRLVEQIRREICTMKLIQHPNVVHL 82
>03_02_0519 + 9066918-9068261
Length = 447
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 29 SPSGTVLPAQGEITQVLRITNPSRSPLRLRIRVSYNV 139
SP+GTVLP Q + +V + P+ + LR R VS V
Sbjct: 22 SPAGTVLPLQVRVQEV-ELEAPAANRLRFRHNVSLTV 57
>01_07_0083 +
40970890-40971015,40971886-40971994,40972679-40972790,
40972944-40973100,40973609-40973761,40974143-40974292,
40974803-40974999,40975446-40975473
Length = 343
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +2
Query: 293 SIYTCFIICPYINDRNCVLYNCIRISVY*CFIICPYKHLHCTRYNSLYIG 442
+IY+ I C + C + I+ S Y +ICP HLH + Y S G
Sbjct: 93 AIYSYTIHCSTQAENICFWF--IQNSPYLICVICPEDHLHLSPYLSYVSG 140
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = +1
Query: 4 HEAPVGHDVSVRNSVASTG*DHAGPQNH*PIQKSTTITDTRVVQXXXXXXXXXXXXEQLP 183
H +PV +V ++ ++ D P N +Q S + T V QL
Sbjct: 26 HRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSDGLHSTYVQPSSADADALVSARPQLV 85
Query: 184 AGAVQLTRGESARLLPLAIRRRETTSIGRQVNYI 285
V L R AR +P A+ R S R V+++
Sbjct: 86 GHLVHLDRLRFARPVPRAVGIRPVPS-SRSVSFV 118
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 27.1 bits (57), Expect = 7.9
Identities = 24/94 (25%), Positives = 37/94 (39%)
Frame = +1
Query: 4 HEAPVGHDVSVRNSVASTG*DHAGPQNH*PIQKSTTITDTRVVQXXXXXXXXXXXXEQLP 183
H +PV +V ++ ++ D P N +Q S + T V QL
Sbjct: 26 HRSPVLQVTAVVPALTASTADSLWPSNGFLLQLSDGLHSTYVQPSSADADALVSARPQLV 85
Query: 184 AGAVQLTRGESARLLPLAIRRRETTSIGRQVNYI 285
V L R AR +P A+ R S R V+++
Sbjct: 86 GHLVHLDRLRFARPVPRAVGIRPVPS-SRSVSFV 118
>06_01_0855 + 6493239-6494420
Length = 393
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 187 GAVQLTRGESARLLPLAIRRRETTSIGRQVNY 282
G + L+R + ARL+PLA+ ++S+G + +
Sbjct: 126 GGLGLSRSQIARLVPLALTCFRSSSVGTNLGF 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,872,300
Number of Sequences: 37544
Number of extensions: 256406
Number of successful extensions: 577
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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