Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N01
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    28   3.1  
AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 68  TQVLRITNPS-RSPLRLRIRVSYNVDGNPVLEQTEVNSFP 184
           TQ + IT  +  +  R+R ++SY VDG   + +  VN FP
Sbjct: 788 TQFMTITRKAPNTTARMRTKISYIVDGTEQVGEGVVNEFP 827


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/77 (23%), Positives = 27/77 (35%)
 Frame = +3

Query: 72  RSSESLTHPEVHYDYGYACRTTWTVTPCWXXXXXXXXXXXXXTDAWRIRPATASSDSPTR 251
           R   + T P + YD  Y C +T TV+                       P T ++ +PT 
Sbjct: 227 RYDPTSTAPHIKYDTSYTCASTTTVSTTSTVTTTKPTTTTTTPTTTTTTPTTTTT-TPTT 285

Query: 252 NDIYRTTSELYRINQST 302
                TT+      +ST
Sbjct: 286 TPTTTTTTPTTTTTEST 302


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 333 IGTVFCTTVSEYQFTSVL*SVPINIYTVLGTTVCI 437
           +G  FC T  +   TSVL    IN++T+   TVC+
Sbjct: 84  LGPTFCATCYKAYATSVLTVNLINLHTLYYRTVCL 118


>AF043693-6|AAB97539.1|  640|Caenorhabditis elegans Hypothetical
           protein C34B2.7 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 47  LPAQGEITQVLRITNPSRSPLRLRIRVSYNVDGNPVLEQTEVNSFPPE 190
           LP   E  Q+    + ++ P+ +   V YN+ G P   + +V  F PE
Sbjct: 354 LPGISETAQIFAGVDVTKEPIPVIPTVHYNMGGVPTNYKGQVLDFTPE 401


>Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical
           protein ZK1010.6 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 399 INIYTVLGTTVCI*GLXCGIS 461
           I +YT++ TT  I GL CGI+
Sbjct: 211 IALYTIIPTTFLIFGLVCGIN 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,077,774
Number of Sequences: 27780
Number of extensions: 230522
Number of successful extensions: 530
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)