Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M23
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    27   1.1  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   1.4  
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces...    26   3.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   4.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   5.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    25   5.6  

>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 354 MEKGSTTDQSDRYIQTTLRNHVSLSHMWTTTTKH 253
           + KGST +Q    I  TL   +  + +W T+ KH
Sbjct: 308 VRKGSTIEQVCNRIHRTLAEQLKYALVWGTSAKH 341


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 387 PVIKFTPVYKKMEKGSTTDQSDRYIQTTL-RN-HVSLSHMWTTTTK 256
           P  +F+ +  K E+G  T +SD     TL RN   ++SH +T ++K
Sbjct: 83  PESRFSHINSKTERGYVTVESDMSSHNTLDRNSKPTVSHSYTNSSK 128


>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 195 WLLNRYIYCLNNKVDI*GVNVLWWLSTCGIKIHGFGASSVCNDRTDR 335
           W  +R I  LN+ V       L W+ + G+++  +GAS++ +D+  R
Sbjct: 204 WERSRCIQVLNDLVS----KSLLWIDSQGVEMAYWGASNLIDDQAQR 246


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 207 RYIYCLNNKVDI*GVNVLWWLSTCGIKIHGFGASSVC 317
           RY Y  +N++   G NVLW ++T  I I      + C
Sbjct: 345 RYCYSQSNEI---GTNVLWSMTTSFINIWRIHPGTCC 378


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 348  KGSTTDQSDRYIQTTLRNHVSLSHMW 271
            KG   D +D Y+Q  L+N   +  +W
Sbjct: 1524 KGGKVDLADEYMQLMLKNFKQVPSVW 1549


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 201 LNRYIYCLNNKVDI*GVNVLWWLSTC 278
           LN YI  L N++D    N+LW  S+C
Sbjct: 381 LNDYITKLQNEIDECRRNLLWAESSC 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,548
Number of Sequences: 5004
Number of extensions: 38444
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)