Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M23
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413...    30   1.0  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    28   4.2  
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    27   5.6  
01_01_1106 + 8750597-8754031                                           27   7.3  
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073           27   9.7  

>08_01_0469 -
           4127950-4127988,4127989-4128264,4128845-4130861,
           4131134-4131987
          Length = 1061

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 254 CFVVVVHMWDKDTWFRSVVC 313
           CFVV+  +WDKD+W R + C
Sbjct: 286 CFVVIDDIWDKDSW-RLIRC 304


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 254 CFVVVVHMWDKDTW 295
           CF+V+  MWDK +W
Sbjct: 295 CFIVIDDMWDKKSW 308


>05_03_0104 -
           8426374-8426542,8426656-8426828,8427020-8427103,
           8427110-8427205,8427530-8427616,8428639-8428767,
           8428922-8429098,8429185-8429295,8429642-8429761,
           8430767-8432427,8432485-8432867,8433707-8434470,
           8434532-8434813,8436158-8436493
          Length = 1523

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 254 CFVVVVHMWDKDTW 295
           CF+V+  +WDK++W
Sbjct: 462 CFIVIDDIWDKESW 475


>01_01_1106 + 8750597-8754031
          Length = 1144

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 421  IQTLHYTYYNVASNQIYTRLQKNGKGINYRSVRSLHTDDAP 299
            +Q+LH  Y     +     L K  K + Y+S++ LH +D P
Sbjct: 896  LQSLHLRYMAGVHSMSSEILVKRQKCVLYQSLKELHFEDMP 936


>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
          Length = 900

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 254 CFVVVVHMWDKDTW 295
           CF+VV  +WDK +W
Sbjct: 225 CFIVVDDIWDKKSW 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,362,646
Number of Sequences: 37544
Number of extensions: 209587
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)