Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M23
         (461 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC053648-1|AAH53648.1|  891|Homo sapiens TBC1D1 protein protein.       29   7.8  
BC050321-1|AAH50321.3| 1168|Homo sapiens TBC1 (tre-2/USP6, BUB2,...    29   7.8  
BC014529-1|AAH14529.1|  900|Homo sapiens TBC1D1 protein protein.       29   7.8  
AY371495-1|AAQ73173.1| 1774|Homo sapiens polycystic kidney disea...    29   7.8  
AY164483-1|AAO32796.1| 2459|Homo sapiens polycystic kidney disea...    29   7.8  
AK131378-1|BAD18529.1|  259|Homo sapiens protein ( Homo sapiens ...    29   7.8  
AK027355-1|BAB55057.1|  674|Homo sapiens protein ( Homo sapiens ...    29   7.8  
AB029031-1|BAA83060.1|  763|Homo sapiens KIAA1108 protein protein.     29   7.8  

>BC053648-1|AAH53648.1|  891|Homo sapiens TBC1D1 protein protein.
          Length = 891

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 335 PISPIVTYRRRSETMYLYP-TCGQPPQ 258
           P+SP   +RRR+ T+  +P  C +PPQ
Sbjct: 306 PLSPQQAFRRRANTLSHFPIECQEPPQ 332


>BC050321-1|AAH50321.3| 1168|Homo sapiens TBC1 (tre-2/USP6, BUB2,
           cdc16) domain family, member 1 protein.
          Length = 1168

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 335 PISPIVTYRRRSETMYLYP-TCGQPPQ 258
           P+SP   +RRR+ T+  +P  C +PPQ
Sbjct: 583 PLSPQQAFRRRANTLSHFPIECQEPPQ 609


>BC014529-1|AAH14529.1|  900|Homo sapiens TBC1D1 protein protein.
          Length = 900

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 335 PISPIVTYRRRSETMYLYP-TCGQPPQ 258
           P+SP   +RRR+ T+  +P  C +PPQ
Sbjct: 315 PLSPQQAFRRRANTLSHFPIECQEPPQ 341


>AY371495-1|AAQ73173.1| 1774|Homo sapiens polycystic kidney disease
            1-like 2 short form protein.
          Length = 1774

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 139  YNPILGEFLEGSYSCVM*QFYSLIHLLFATILCKFT 32
            Y+P+LG FL G  SC++   + +++L  + IL  F+
Sbjct: 1681 YSPVLGSFLIG--SCIVFMTFVVLNLFISVILVAFS 1714


>AY164483-1|AAO32796.1| 2459|Homo sapiens polycystic kidney disease
            1-like 2 protein.
          Length = 2459

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 139  YNPILGEFLEGSYSCVM*QFYSLIHLLFATILCKFT 32
            Y+P+LG FL G  SC++   + +++L  + IL  F+
Sbjct: 2366 YSPVLGSFLIG--SCIVFMTFVVLNLFISVILVAFS 2399


>AK131378-1|BAD18529.1|  259|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16437 fis, clone BRAMY2019111, weakly  similar
           to POLYCYSTIN 2. ).
          Length = 259

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -2

Query: 139 YNPILGEFLEGSYSCVM*QFYSLIHLLFATILCKFT 32
           Y+P+LG FL G  SC++   + +++L  + IL  F+
Sbjct: 166 YSPVLGSFLIG--SCIVFMTFVVLNLFISVILVAFS 199


>AK027355-1|BAB55057.1|  674|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14449 fis, clone HEMBB1001684. ).
          Length = 674

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 335 PISPIVTYRRRSETMYLYP-TCGQPPQ 258
           P+SP   +RRR+ T+  +P  C +PPQ
Sbjct: 89  PLSPQQAFRRRANTLSHFPIECQEPPQ 115


>AB029031-1|BAA83060.1|  763|Homo sapiens KIAA1108 protein protein.
          Length = 763

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 335 PISPIVTYRRRSETMYLYP-TCGQPPQ 258
           P+SP   +RRR+ T+  +P  C +PPQ
Sbjct: 178 PLSPQQAFRRRANTLSHFPIECQEPPQ 204


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,594,840
Number of Sequences: 237096
Number of extensions: 1270780
Number of successful extensions: 2557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2557
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)