Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M22
         (591 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5U5 Cluster: Vacuolar protein sorting 26; n=4; Coelo...   136   3e-31
UniRef50_UPI0000E25887 Cluster: PREDICTED: similar to DCRA isofo...   107   2e-22
UniRef50_O14972 Cluster: Down syndrome critical region protein 3...   107   2e-22
UniRef50_Q9VPC3 Cluster: CG4074-PA; n=2; Sophophora|Rep: CG4074-...    83   4e-15
UniRef50_Q54DI8 Cluster: Putative uncharacterized protein; n=1; ...    79   8e-14
UniRef50_Q9LP69 Cluster: T1N15.17; n=4; core eudicotyledons|Rep:...    71   2e-11
UniRef50_A4RR00 Cluster: Predicted protein; n=1; Ostreococcus lu...    42   0.008
UniRef50_Q01GJ8 Cluster: LOC431791 protein; n=1; Ostreococcus ta...    39   0.076
UniRef50_Q4DXH6 Cluster: Putative uncharacterized protein; n=2; ...    38   0.13 
UniRef50_Q2NH70 Cluster: Member of asn/thr-rich large protein fa...    34   2.2  
UniRef50_UPI0000D9B6FA Cluster: PREDICTED: similar to tramdorin ...    33   5.0  
UniRef50_Q4UBM2 Cluster: Cleavage and polyadenylation specificty...    33   5.0  
UniRef50_UPI00006CFAA2 Cluster: hypothetical protein TTHERM_0044...    33   6.6  
UniRef50_Q5HXX1 Cluster: Type I restriction-modification enzyme ...    33   6.6  
UniRef50_Q4Z3E8 Cluster: Putative uncharacterized protein; n=10;...    33   6.6  

>UniRef50_Q2F5U5 Cluster: Vacuolar protein sorting 26; n=4;
           Coelomata|Rep: Vacuolar protein sorting 26 - Bombyx mori
           (Silk moth)
          Length = 301

 Score =  136 bits (330), Expect = 3e-31
 Identities = 64/73 (87%), Positives = 69/73 (94%)
 Frame = +2

Query: 371 AGVVVVETNNDLRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPG 550
           AGVVVVE+++D+RHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLIN T+EL  PG
Sbjct: 23  AGVVVVESSSDVRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPG 82

Query: 551 KIPVGTTEIPFEM 589
           KIPVG TEIPFEM
Sbjct: 83  KIPVGITEIPFEM 95



 Score = 36.7 bits (81), Expect = 0.41
 Identities = 13/21 (61%), Positives = 20/21 (95%)
 Frame = +3

Query: 315 MSVNLTITLKRSSKVYHDGQV 377
           MS+NL+I LKR+SK+YH+G++
Sbjct: 1   MSINLSICLKRASKIYHEGEI 21


>UniRef50_UPI0000E25887 Cluster: PREDICTED: similar to DCRA isoform
           5; n=2; Coelomata|Rep: PREDICTED: similar to DCRA
           isoform 5 - Pan troglodytes
          Length = 270

 Score =  107 bits (257), Expect = 2e-22
 Identities = 47/72 (65%), Positives = 61/72 (84%)
 Frame = +2

Query: 371 AGVVVVETNNDLRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPG 550
           +GVVV+ + + ++H+G+SLTMEG VNLQLS K+VG+FEAF NS+KPI +IN+TIE+V PG
Sbjct: 23  SGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPG 82

Query: 551 KIPVGTTEIPFE 586
           K P G TEIPFE
Sbjct: 83  KFPSGKTEIPFE 94


>UniRef50_O14972 Cluster: Down syndrome critical region protein 3;
           n=37; Eumetazoa|Rep: Down syndrome critical region
           protein 3 - Homo sapiens (Human)
          Length = 297

 Score =  107 bits (257), Expect = 2e-22
 Identities = 47/72 (65%), Positives = 61/72 (84%)
 Frame = +2

Query: 371 AGVVVVETNNDLRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPG 550
           +GVVV+ + + ++H+G+SLTMEG VNLQLS K+VG+FEAF NS+KPI +IN+TIE+V PG
Sbjct: 23  SGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIEMVKPG 82

Query: 551 KIPVGTTEIPFE 586
           K P G TEIPFE
Sbjct: 83  KFPSGKTEIPFE 94


>UniRef50_Q9VPC3 Cluster: CG4074-PA; n=2; Sophophora|Rep: CG4074-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 295

 Score = 83.4 bits (197), Expect = 4e-15
 Identities = 37/72 (51%), Positives = 51/72 (70%)
 Frame = +2

Query: 374 GVVVVETNNDLRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPGK 553
           G V  +   + +HEG+ L +EG VNLQLS K VG+F+AF NS+KPINL+  ++EL APGK
Sbjct: 4   GCVQFQCAQETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPINLLQNSLELSAPGK 63

Query: 554 IPVGTTEIPFEM 589
           +  G +E  FE+
Sbjct: 64  LSAGRSEFHFEL 75


>UniRef50_Q54DI8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 304

 Score = 79.0 bits (186), Expect = 8e-14
 Identities = 36/73 (49%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
 Frame = +2

Query: 371 AGVVVVETNNDLRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELV-AP 547
           +G VV+ + +D+ H G+++ +EG V LQLS+K+VG+FEAF NS+KPI L++ TI +    
Sbjct: 23  SGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAFYNSLKPITLMHYTISVTNGG 82

Query: 548 GKIPVGTTEIPFE 586
           GK   G TE+PFE
Sbjct: 83  GKFQAGITELPFE 95


>UniRef50_Q9LP69 Cluster: T1N15.17; n=4; core eudicotyledons|Rep:
           T1N15.17 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 460

 Score = 71.3 bits (167), Expect = 2e-11
 Identities = 30/72 (41%), Positives = 48/72 (66%)
 Frame = +2

Query: 374 GVVVVETNNDLRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPGK 553
           G +V+++   + H+ + L++ G VNLQ+   + G+ E+F   IKPI ++  TIE+ + GK
Sbjct: 33  GKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESFYGVIKPIQIVKKTIEVKSSGK 92

Query: 554 IPVGTTEIPFEM 589
           IP GTTEIPF +
Sbjct: 93  IPPGTTEIPFSL 104


>UniRef50_A4RR00 Cluster: Predicted protein; n=1; Ostreococcus
           lucimarinus CCE9901|Rep: Predicted protein -
           Ostreococcus lucimarinus CCE9901
          Length = 256

 Score = 42.3 bits (95), Expect = 0.008
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 410 HEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPGKIPVGTTEIPF 583
           H G+ LT  G V L++   +V + E+    ++P+ +++ ++ L  PG++ VG    PF
Sbjct: 1   HNGVLLTACGNVQLRVGDSSVSVLESLFMVVEPVRVLDVSLVLAPPGRLAVGVHAFPF 58


>UniRef50_Q01GJ8 Cluster: LOC431791 protein; n=1; Ostreococcus
           tauri|Rep: LOC431791 protein - Ostreococcus tauri
          Length = 405

 Score = 39.1 bits (87), Expect = 0.076
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +2

Query: 410 HEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPGKIPVGTTEIPF 583
           H+G+ +T  G V +++    V + EA   S+ P+++++    L  PG++  G  + PF
Sbjct: 117 HQGVVVTACGSVAMRVGEGRVTMLEALFTSVDPVSVLDVQSVLAPPGRLATGVHKFPF 174


>UniRef50_Q4DXH6 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 313

 Score = 38.3 bits (85), Expect = 0.13
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 374 GVVVVETNNDLRHEGLSLTMEGCVNLQLST-KNVGIFEAFSNSIKPINLINTTIELVAPG 550
           G VVV          ++LT+ G V +Q    +N  +F    N IKP+ +++  I L   G
Sbjct: 28  GCVVVNYATSSSFVDINLTVLGVVAIQFPYGENASVFRRVGN-IKPLKVMSLQIPLCRRG 86

Query: 551 -KIPVGTTEIPF 583
            +IP G TE+PF
Sbjct: 87  TQIPAGKTEVPF 98


>UniRef50_Q2NH70 Cluster: Member of asn/thr-rich large protein family;
            n=2; Methanosphaera stadtmanae DSM 3091|Rep: Member of
            asn/thr-rich large protein family - Methanosphaera
            stadtmanae (strain DSM 3091)
          Length = 2044

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
 Frame = +2

Query: 239  VIICYHKIKNSVIDKLKVFIVLRKRNVCKFN-YYSQEKQQSIS*RAGVVVVETNNDL--R 409
            V + Y+ I  +  +   ++I   K++   FN + S    Q+I    G + ++ NN +  +
Sbjct: 1282 VTMAYNNINTNGTNNTPIYIENNKKSDILFNNFISNVNAQNIFKNMGNIAIKNNNMIIEK 1341

Query: 410  HEGLSLTM-EGCVNLQLSTKNVGIFEAFSN-SIKPINLINTTIELVAPGKI 556
             + L L + E   N Q+ +  +         ++K IN+ N TIE   PG I
Sbjct: 1342 QKNLPLIIIENAENAQVISNFLKTENLMGKYAVKTINVTNLTIEFNKPGTI 1392


>UniRef50_UPI0000D9B6FA Cluster: PREDICTED: similar to tramdorin 1;
           n=1; Macaca mulatta|Rep: PREDICTED: similar to tramdorin
           1 - Macaca mulatta
          Length = 331

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 22/60 (36%), Positives = 32/60 (53%)
 Frame = -1

Query: 567 VPTGIFPGATSSIVVFIKFIGFILLEKASNMPTFFVLSCKLTQPSMVRESPSCLKSLLVS 388
           +PT I   ATS++  F   +  + L+    +PTF VL+   T  S+V      L+SLLVS
Sbjct: 93  IPTPIVD-ATSTVFTFPLLVLLVFLQSLCVLPTFSVLNKVFTGGSLVLIFQHLLQSLLVS 151


>UniRef50_Q4UBM2 Cluster: Cleavage and polyadenylation specificty
            factor, subunit, putative; n=4; Piroplasmida|Rep:
            Cleavage and polyadenylation specificty factor, subunit,
            putative - Theileria annulata
          Length = 1282

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = +1

Query: 10   FTFQIITKFFFLCFK*FIDLLIALY*CTYHEISLGSYFYCMFSVYLFYTNFL 165
            + FQI T +FF+    FI  + ALY   + E ++    YC+   YL YT FL
Sbjct: 1026 YHFQIFTLWFFIYLFSFI--ISALYLYFFVESNVKKVNYCLSLNYLLYTTFL 1075


>UniRef50_UPI00006CFAA2 Cluster: hypothetical protein TTHERM_00443070;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00443070 - Tetrahymena thermophila SB210
          Length = 1050

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 227  DFEEVIICYHKIKNSVIDKLKVFIVLRKRNVCKFNYYSQEKQQS 358
            DF  + IC  +I N+ ID  K+++  + +    FNYY  + ++S
Sbjct: 880  DFASMNICLIRIINNDIDSAKIYLKTKLQKRQNFNYYFTQTEES 923


>UniRef50_Q5HXX1 Cluster: Type I restriction-modification enzyme S
           subunit; n=1; Gluconobacter oxydans|Rep: Type I
           restriction-modification enzyme S subunit -
           Gluconobacter oxydans (Gluconobacter suboxydans)
          Length = 402

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +2

Query: 254 HKIKNSVIDKLKVFIVLRKRNVCKFNYYSQEKQQSIS*RAGVVVVETN 397
           HKI N    +L   ++  + ++  F YY+Q+K Q+I   +G+ ++ +N
Sbjct: 67  HKILNKGAVELGDIVITTRGSIGHFAYYNQKKYQTIRINSGMAILRSN 114


>UniRef50_Q4Z3E8 Cluster: Putative uncharacterized protein; n=10;
            Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein - Plasmodium berghei
          Length = 1851

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
 Frame = +1

Query: 22   IITKFFFLCFK*FIDLLIALY*CTYHEISLGSYFYCMFSVYLFYTNFL*H------LFIN 183
            IIT    L +K F   L  LY  TY++  L ++ +  F + L+ +  L H      L++N
Sbjct: 1519 IITALCILKYKIFF-FLNTLY--TYYQWIL-TFAWNNFLLNLYASKSLYHIKNNHELYLN 1574

Query: 184  IEMEPFISTITTKH*L*RSYYLLS--*NKK*RYRQIEGVYCFTETK 315
              +E  +  ITT+H    +YY+ +   N    Y+Q E  Y F+ETK
Sbjct: 1575 FLLEAMLIPITTEHQELYNYYVNNDYKNNSEIYKQFEEFYNFSETK 1620


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 550,772,567
Number of Sequences: 1657284
Number of extensions: 10564551
Number of successful extensions: 24671
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24642
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)