Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M22
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.67 
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    26   3.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.2  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = -1

Query: 579 GISVVPTGIFPGATSSIVVFIKFIGFILLEKASN--MPTFFVLSCKLTQPSM-VRESPSC 409
           G + +P+G     +SS+    K  GF L E ASN   P+ F+ S  +   S+  R  PS 
Sbjct: 190 GAASLPSGGLSNLSSSLRSSSKSAGFSLFESASNSFTPSSFIESANMESLSIPSRRRPSS 249

Query: 408 LKSLLVSTTTTPARHDI 358
           +  +     T P+R +I
Sbjct: 250 IAPI----GTRPSRKEI 262


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 576 ISVVPTGIFPGATSSIVVFIKFIGFILLEKASN 478
           +S   T + PG+ +SI VF+K     L+E A N
Sbjct: 46  LSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHN 78


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 428 LGKVLHVLNHYWSPQQLHLPVMIYFAASLE 339
           L  +LH +    SPQQ++  +++YF+  ++
Sbjct: 411 LADMLHYVRMELSPQQIYKVILLYFSILMD 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,691
Number of Sequences: 5004
Number of extensions: 48514
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)