Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_M22
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated ...    30   1.1  
Z77665-6|CAE17861.1|  123|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z77665-10|CAB01221.2|  128|Caenorhabditis elegans Hypothetical p...    27   7.5  
U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    27   10.0 
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    27   10.0 
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    27   10.0 
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    27   10.0 

>U88308-12|AAK68216.1|  467|Caenorhabditis elegans Uncoordinated
           protein 11, isoform e protein.
          Length = 467

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 431 WLGKVLHVLNHYWSPQQLHL--PVMIYFAASL 342
           WL + LH LN    PQ +HL   +++YF+ SL
Sbjct: 435 WLQRTLHKLNRPRPPQPIHLDYSLVVYFSLSL 466


>Z77665-6|CAE17861.1|  123|Caenorhabditis elegans Hypothetical
           protein K02E11.9 protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 439 LCQLAAQHKECWHI*SFFQQYKAYKLNKHNNRTCGSWEN 555
           L Q+A+  +E  +    ++++     N  N +TCG WEN
Sbjct: 34  LAQVASYRREIQNEKDVWEEHLYRVCNGKNKKTCGFWEN 72


>Z77665-10|CAB01221.2|  128|Caenorhabditis elegans Hypothetical
           protein K02E11.6 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 439 LCQLAAQHKECWHI*SFFQQYKAYKLNKHNNRTCGSWENTSWYNRDP 579
           L Q+A   +E ++    + ++     N  N +TCG WEN     + P
Sbjct: 39  LPQVANYRREIYNNNDAYDEHIYRVCNGKNKKTCGYWENVKTKKKVP 85


>U50184-1|ABJ99064.1| 1540|Caenorhabditis elegans Hypothetical
           protein W03A3.2 protein.
          Length = 1540

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 410 HEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINTTIELVAPGKIPVGTTEIPF 583
           H GL++    C+ L    KN+ I  A S     +NL    + + A  + P   T + +
Sbjct: 206 HAGLTMEERECIELGFREKNIVILVATSTLASGVNLPAERVLIKAQPRGPSALTSLNY 263


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 224 IDFEEVI-ICYHKIKNSVIDKLKVFIVLRKRNVCKFN 331
           I F EV+    H   N VI+  KVF  +  R VCK N
Sbjct: 127 ISFYEVMSYVTHLSVNEVIELEKVFATISDRAVCKLN 163


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 224 IDFEEVI-ICYHKIKNSVIDKLKVFIVLRKRNVCKFN 331
           I F EV+    H   N VI+  KVF  +  R VCK N
Sbjct: 127 ISFYEVMSYVTHLSVNEVIELEKVFATISDRAVCKLN 163


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 107 LLVPIFIVCFPCICF 151
           L +P FIVCF C CF
Sbjct: 54  LFLPCFIVCFWCRCF 68


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 224 IDFEEVI-ICYHKIKNSVIDKLKVFIVLRKRNVCKFN 331
           I F EV+    H   N VI+  KVF  +  R VCK N
Sbjct: 127 ISFYEVMSYVTHLSVNEVIELEKVFATISDRAVCKLN 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,313
Number of Sequences: 27780
Number of extensions: 268237
Number of successful extensions: 643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)